View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21241_low_3 (Length: 545)

Name: NF21241_low_3
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21241_low_3
NF21241_low_3
[»] chr2 (19 HSPs)
chr2 (19-351)||(38021951-38022283)
chr2 (19-338)||(38033847-38034169)
chr2 (418-488)||(38022350-38022420)
chr2 (418-488)||(38034250-38034322)
chr2 (484-532)||(14008493-14008541)
chr2 (126-182)||(38046592-38046648)
chr2 (484-532)||(44137296-44137344)
chr2 (126-181)||(38028444-38028499)
chr2 (126-181)||(38043084-38043139)
chr2 (126-181)||(38045086-38045141)
chr2 (126-181)||(38067431-38067486)
chr2 (133-187)||(37987372-37987426)
chr2 (124-178)||(38031872-38031926)
chr2 (491-532)||(18018420-18018461)
chr2 (484-532)||(4003296-4003344)
chr2 (496-532)||(8990789-8990825)
chr2 (133-181)||(38003630-38003678)
chr2 (496-532)||(38294107-38294143)
chr2 (490-530)||(43334986-43335026)
[»] chr4 (15 HSPs)
chr4 (480-532)||(22845042-22845094)
chr4 (485-532)||(20534146-20534193)
chr4 (490-532)||(36151191-36151233)
chr4 (483-532)||(52594789-52594838)
chr4 (496-532)||(13270202-13270238)
chr4 (496-532)||(17622299-17622335)
chr4 (490-532)||(31530242-31530284)
chr4 (490-532)||(32060865-32060907)
chr4 (490-532)||(37756539-37756581)
chr4 (490-532)||(38366245-38366287)
chr4 (490-532)||(41844654-41844696)
chr4 (490-532)||(46177092-46177134)
chr4 (491-532)||(50643042-50643083)
chr4 (496-532)||(16535910-16535946)
chr4 (484-532)||(54806343-54806391)
[»] scaffold0028 (1 HSPs)
scaffold0028 (485-532)||(35270-35317)
[»] chr5 (7 HSPs)
chr5 (485-532)||(10295705-10295752)
chr5 (496-533)||(25027140-25027177)
chr5 (483-532)||(38120008-38120057)
chr5 (496-532)||(38302186-38302222)
chr5 (485-532)||(25598584-25598631)
chr5 (490-524)||(21916124-21916158)
chr5 (484-532)||(17093116-17093164)
[»] chr3 (14 HSPs)
chr3 (485-532)||(39499417-39499464)
chr3 (485-532)||(47789261-47789308)
chr3 (490-532)||(36796644-36796686)
chr3 (490-532)||(44411974-44412016)
chr3 (490-532)||(49861055-49861097)
chr3 (490-535)||(55445125-55445170)
chr3 (485-533)||(3537424-3537472)
chr3 (485-532)||(39115124-39115171)
chr3 (490-529)||(55439807-55439846)
chr3 (490-532)||(30121342-30121384)
chr3 (490-532)||(38456489-38456531)
chr3 (490-532)||(52620655-52620697)
chr3 (490-527)||(47789616-47789653)
chr3 (496-532)||(49682828-49682864)
[»] chr1 (14 HSPs)
chr1 (485-532)||(33991761-33991808)
chr1 (498-532)||(23871291-23871325)
chr1 (490-532)||(32300274-32300316)
chr1 (490-531)||(32299323-32299364)
chr1 (483-532)||(50247815-50247864)
chr1 (484-532)||(896311-896359)
chr1 (496-532)||(1688043-1688079)
chr1 (490-532)||(9595780-9595822)
chr1 (490-532)||(39179271-39179313)
chr1 (490-532)||(42161874-42161916)
chr1 (490-532)||(50402961-50403003)
chr1 (490-527)||(39125266-39125303)
chr1 (496-532)||(7401392-7401428)
chr1 (496-532)||(27500203-27500239)
[»] chr8 (10 HSPs)
chr8 (490-532)||(36906408-36906450)
chr8 (485-532)||(1111291-1111338)
chr8 (490-532)||(1941870-1941912)
chr8 (490-532)||(33230866-33230908)
chr8 (490-532)||(34148400-34148442)
chr8 (496-533)||(3404399-3404436)
chr8 (490-531)||(27030031-27030072)
chr8 (496-532)||(1111063-1111099)
chr8 (496-528)||(25033603-25033635)
chr8 (504-532)||(34272734-34272762)
[»] chr7 (6 HSPs)
chr7 (490-532)||(7666984-7667026)
chr7 (490-533)||(34651873-34651916)
chr7 (490-532)||(28437361-28437403)
chr7 (480-532)||(3658676-3658728)
chr7 (496-532)||(35902075-35902111)
chr7 (496-532)||(44690082-44690118)
[»] chr6 (3 HSPs)
chr6 (485-531)||(29241648-29241694)
chr6 (490-532)||(4909700-4909742)
chr6 (484-533)||(2365761-2365810)
[»] scaffold0717 (1 HSPs)
scaffold0717 (485-532)||(1798-1845)
[»] scaffold0036 (1 HSPs)
scaffold0036 (490-532)||(82669-82711)
[»] scaffold1562 (1 HSPs)
scaffold1562 (491-532)||(359-400)
[»] scaffold1158 (1 HSPs)
scaffold1158 (491-532)||(2193-2234)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 38021951 - 38022283
Alignment:
Q  19 ggaacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtctcatgccaacaacaaaattccttccacaaaattgagggacga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38021951 ggaacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtctcatgccaacaacaaaattccttccacaaaattgagggacga 38022050  T
Q  119 gaaatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaagaaagaaacattttggattatgcaaaggaaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38022051 gaaatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaagaaagaaacattttgaattatgcaaaggaaga 38022150  T
Q  219 tccaatcaaacacaagagtttttggtcaagattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaagtggtcttggaa 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38022151 tccaatcaaacacaagagtttttgatcaagattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaagtggtcttggaa 38022250  T
Q  319 gtgattcaatttttgcatggatagaaatttgtg 351  Q
    |||||||||||||||||||||||||||||||||    
T  38022251 gtgattcaatttttgcatggatagaaatttgtg 38022283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 38033847 - 38034169
Alignment:
Q  19 ggaacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtctcatgccaacaacaaaattccttccacaaaattgagggacga 118  Q
    |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||| || |||| || ||||||||||| ||    
T  38033847 ggaacagtgttataagatcagcacaacaacatgctaaacataatatcaggtctttgtctcatgccaacaacaaagtttcttcaaccaaattgagggatga 38033946  T
Q  119 gaaatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaagaaagaaacattttggattat----gcaaagg 214  Q
     |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  |||| |||  |||||    || | ||    
T  38033947 caaatccaaacagtcggaggaatctttgagaacggtcatgttcttgagttgctggggtcccaactaaagatattaaca-tttcaattatgctagctaggg 38034045  T
Q  215 aagatccaatcaaacacaagagtttttggtcaagattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaagtggtctt 314  Q
    ||||||| ||||| ||||| |||||||  |||||||||||||||| | ||||||||||| |||||||||  ||| || ||||||| | ||||||||||||    
T  38034046 aagatcctatcaagcacaaaagttttttatcaagattaattgagtctaaaacaagtgaaagaatcatcccttttgtttctttggatcatgaagtggtctt 38034145  T
Q  315 ggaagtgattcaatttttgcatgg 338  Q
    ||||||||||||||||||||||||    
T  38034146 ggaagtgattcaatttttgcatgg 38034169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 38022350 - 38022420
Alignment:
Q  418 aagcttttattcatggatttatatagagtttaatagcttatagaagaacatgagatttactaaaattctta 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38022350 aagcttttattcatggatttatatagagtttaatagcttatagaagaacatgagatttactaaaattctta 38022420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 38034250 - 38034322
Alignment:
Q  418 aagcttttattcatggatttatatagag--tttaatagcttatagaagaacatgagatttactaaaattctta 488  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| || ||| |||||||||||||||||||||    
T  38034250 aagcttttattcatggatttatatatagaatttaatagcttatacaacaacgtgagatttactaaaattctta 38034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 14008541 - 14008493
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||    
T  14008541 tcttaggctttctttgggagtttggaggggaagggaggggagggttttg 14008493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 38046592 - 38046648
Alignment:
Q  126 aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaac 182  Q
    ||||| |||||||||||||||||||| ||||||| ||| || || ||||||||||||    
T  38046592 aagcaatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaac 38046648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 44137344 - 44137296
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  44137344 tcttaggctttgtttgggagtttggaggggaagggaagggagggctttg 44137296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 38028444 - 38028499
Alignment:
Q  126 aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 181  Q
    ||||| ||||||||||||||||| |  ||||||| ||||||||| |||||||||||    
T  38028444 aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa 38028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 38043084 - 38043139
Alignment:
Q  126 aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 181  Q
    ||||| ||||||||||||||||| |  ||||||| ||||||||| |||||||||||    
T  38043084 aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa 38043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 38045086 - 38045141
Alignment:
Q  126 aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 181  Q
    ||||| || |||||||||||||| |  ||||||| |||||||||||||||||||||    
T  38045086 aagcaatcggaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaa 38045141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 38067431 - 38067486
Alignment:
Q  126 aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 181  Q
    ||||| ||||||||||||||||| |  ||||||| ||||||||| |||||||||||    
T  38067431 aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa 38067486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 37987372 - 37987426
Alignment:
Q  133 cagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaag 187  Q
    |||| |||||| | |||||||| |||| |||||||||||||||||| ||||||||    
T  37987372 cagaagaatctcttagaactgtgatgtacttgagttgctggggtcctaactaaag 37987426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 38031872 - 38031926
Alignment:
Q  124 ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcc 178  Q
    |||| ||| ||||||| |||||||| |||||||||| |||||| |||||||||||    
T  38031872 ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcc 38031926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 18018420 - 18018461
Alignment:
Q  491 ctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  18018420 ctttgtttgggagtttggaggggaagggatgggagggctttg 18018461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 4003296 - 4003344
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| |||| |||||||||| | |||||||||||||||||||    
T  4003296 tcttaggctttgtttgtgagtttggagtggaagggaggggagggctttg 4003344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 8990789 - 8990825
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  8990789 tttgggagtttggaggggaaggaaggggagggctttg 8990825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 38003630 - 38003678
Alignment:
Q  133 cagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 181  Q
    ||||||| |||||||| |||||||||| |||||| || |||||||||||    
T  38003630 cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa 38003678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 38294143 - 38294107
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  38294143 tttgggagtttggaggggaagggaggggaggactttg 38294107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 530
Target Start/End: Complemental strand, 43335026 - 43334986
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctt 530  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  43335026 gctttgtttgggagtttgtagggaaagagaggggagggctt 43334986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 22845042 - 22845094
Alignment:
Q  480 aaattcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  22845042 aaatacttaggctttgtttgggagtttggaggggaagggaggggagggctttg 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 20534193 - 20534146
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  20534193 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 20534146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 36151191 - 36151233
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  36151191 gctttatttgggagtttggaggggaagggaggggaggactttg 36151233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 52594838 - 52594789
Alignment:
Q  483 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  52594838 ttcttaagctttgtttgggagtttggagggaaggggaggggagggttttg 52594789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 13270238 - 13270202
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||||||||||||||||||||||| ||||||||||    
T  13270238 tttgggagtttggagggaaagggaggagagggctttg 13270202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 17622299 - 17622335
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||||||||||||||||||    
T  17622299 tttgggagtttggaggggaagggaggggagggctttg 17622335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 31530284 - 31530242
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| |||| |||||||||||| |||||||||||||||||||    
T  31530284 gctttgtttgagagtttggaggggaagggaggggagggctttg 31530242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 32060907 - 32060865
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||| | |||||||||||||||||||    
T  32060907 gctttgtttgggagtttggagtggaagggaggggagggctttg 32060865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 37756539 - 37756581
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||    
T  37756539 gctttgtttggaagtttggaggggaagggaggggagggctttg 37756581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 38366287 - 38366245
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||| | |||||||||||||||||||    
T  38366287 gctttgtttgggagtttggagaggaagggaggggagggctttg 38366245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 41844696 - 41844654
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||    
T  41844696 gctttgtttgggagtttggaggggaagggaggggaggactttg 41844654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 46177134 - 46177092
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  46177134 gctttgtttgtgagtttggagggaaagggaggggagggttttg 46177092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 50643083 - 50643042
Alignment:
Q  491 ctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  50643083 ctttgtttgggagtttggaggggaagggatgggagggctttg 50643042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 16535946 - 16535910
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||||||||||| || |||||||||||||||||||    
T  16535946 tttgggagtttggatgggaagggaggggagggctttg 16535910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 54806343 - 54806391
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||| ||||    
T  54806343 tcttaggctttgtttgggagtttggagaggaagggaggggagggttttg 54806391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 35270 - 35317
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  35270 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 35317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 10295752 - 10295705
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  10295752 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 10295705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 25027177 - 25027140
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttga 533  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25027177 tttgggagtttggaggggaagggaggggagggctttga 25027140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 532
Target Start/End: Original strand, 38120008 - 38120057
Alignment:
Q  483 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||| ||||| ||||||||||||||||| |||||||||||| ||||||    
T  38120008 ttcttaggctttgtttgggagtttggaggggaagggaggggagagctttg 38120057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 38302186 - 38302222
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38302186 tttgggagtttggaggggaagggaggggagggctttg 38302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 25598584 - 25598631
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| |||||    
T  25598584 cttaggctttgtttgggagtttggaggggaagggaggggaggactttg 25598631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Original strand, 21916124 - 21916158
Alignment:
Q  490 gctttatttgggagtttggagggaaagggagggga 524  Q
    |||||||||||||||||||||||||||||| ||||    
T  21916124 gctttatttgggagtttggagggaaagggaaggga 21916158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Complemental strand, 17093164 - 17093116
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||| |||||    
T  17093164 tcttaggctttgtttgggagtttggaggggaagggagggaaggtctttg 17093116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 39499464 - 39499417
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  39499464 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 39499417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 47789261 - 47789308
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  47789261 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 47789308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 36796686 - 36796644
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  36796686 gctttgtttgggagtttggaggaaaagggaggggagggctttg 36796644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 44411974 - 44412016
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  44411974 gctttgtttgggagtttggaggggaagggaggggagggctttg 44412016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 49861097 - 49861055
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  49861097 gctttgtttgggagtttggaggggaagggaggggagggctttg 49861055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 55445170 - 55445125
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttgatg 535  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||    
T  55445170 gctttgtttgggagtttggaggggaagggaggggagggctctgatg 55445125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 3537472 - 3537424
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttga 533  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  3537472 cttaggctttgtttgggagtttggaggggaagggaggggaaggctttga 3537424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 39115171 - 39115124
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| |||| |||||||||||||||||||||||| |||||||    
T  39115171 cttaggctttgtttgtgagtttggagggaaagggaggggatggctttg 39115124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 529
Target Start/End: Complemental strand, 55439846 - 55439807
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggct 529  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  55439846 gctttgtttgggagtttggaggggaagggaggggagggct 55439807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 30121342 - 30121384
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| | |||||||||||||||||    
T  30121342 gctttgtttgggagtttggaggggaggggaggggagggctttg 30121384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 38456489 - 38456531
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||    
T  38456489 gctttgtttgggagtttggaggggaagggaggggagagctttg 38456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 52620655 - 52620697
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| | |||||||||||||||||    
T  52620655 gctttgtttgggagtttggaggggaggggaggggagggctttg 52620697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Complemental strand, 47789653 - 47789616
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggaggg 527  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  47789653 gctttgtttgggagtttggaggggaagggaggggaggg 47789616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 49682828 - 49682864
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| |||||||||||| |||||||||||||||||||    
T  49682828 tttgtgagtttggaggggaagggaggggagggctttg 49682864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 33991808 - 33991761
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  33991808 cttaggctttgtttgggagtttggaggggaagggaggggagggctttg 33991761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 532
Target Start/End: Original strand, 23871291 - 23871325
Alignment:
Q  498 tgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||||||||||||||||||||||||||||||||    
T  23871291 tgggagtttggagggaaagggaggggagggctttg 23871325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 32300316 - 32300274
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  32300316 gctttgtttgggagtttggaggggaagggaggggagggctttg 32300274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 531
Target Start/End: Complemental strand, 32299364 - 32299323
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggcttt 531  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  32299364 gctttgtttgggagtttggaggggaagggaggggagggcttt 32299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 50247864 - 50247815
Alignment:
Q  483 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||| ||||    
T  50247864 ttcttaggctttctttgggagtttggaggggaagggaggggagggttttg 50247815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 896311 - 896359
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||| ||||||||||||||||  |||||||||||||||||||    
T  896311 tcttaggctttgtttgggagtttggaggagaagggaggggagggctttg 896359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 1688043 - 1688079
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1688043 tttgggagtttggaggggaagggaggggagggctttg 1688079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 9595822 - 9595780
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  9595822 gctttgtttgggagtttggaggggaagggaggggagggttttg 9595780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 39179313 - 39179271
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  39179313 gctttgtttgggagtttggaggggaagggaggggagggttttg 39179271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 42161874 - 42161916
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||    
T  42161874 gctttgtttgggagtttggaggggaagagaggggagggctttg 42161916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 50403003 - 50402961
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||    
T  50403003 gctttgtttgggagtttggagggtaagggagaggagggctttg 50402961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Original strand, 39125266 - 39125303
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggaggg 527  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  39125266 gctttgtttgggagtttggagggaaggggaggggaggg 39125303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 7401392 - 7401428
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  7401392 tttgggagtttggaggggaagagaggggagggctttg 7401428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 27500239 - 27500203
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||| | |||||||||||||||||||    
T  27500239 tttgggagtttggagaggaagggaggggagggctttg 27500203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 36906450 - 36906408
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  36906450 gctttgtttgggagtttggaggggaagggaggggagggctttg 36906408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 1111338 - 1111291
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| |||| |||||||||||||||||| |||||||||||||    
T  1111338 cttaggctttgtttgcgagtttggagggaaagggtggggagggctttg 1111291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 1941870 - 1941912
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||    
T  1941870 gctttgtttgggagtttggaggggaagggaggggaggactttg 1941912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 33230866 - 33230908
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||    
T  33230866 gctttgtttgggagtttggaggggaagggaggagagggctttg 33230908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 34148400 - 34148442
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||    
T  34148400 gctttgtttgggagtttggaggggaagggaggggagggttttg 34148442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 533
Target Start/End: Original strand, 3404399 - 3404436
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttga 533  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  3404399 tttgggagtttggaggggaagggaggggaggactttga 3404436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 27030031 - 27030072
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggcttt 531  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  27030031 gctttgtttgggagttttgagggaaagggaggggaaggcttt 27030072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 1111063 - 1111099
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  1111063 tttgggagtttggaggggaagggaagggagggctttg 1111099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 528
Target Start/End: Complemental strand, 25033635 - 25033603
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggc 528  Q
    ||||||||||||||||| |||||||||||||||    
T  25033635 tttgggagtttggaggggaagggaggggagggc 25033603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 532
Target Start/End: Complemental strand, 34272762 - 34272734
Alignment:
Q  504 tttggagggaaagggaggggagggctttg 532  Q
    |||||||||||||||||||||||||||||    
T  34272762 tttggagggaaagggaggggagggctttg 34272734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 7666984 - 7667026
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  7666984 gctttgtttgggagtttggaggggaagggaggggagggctttg 7667026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 34651873 - 34651916
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttga 533  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  34651873 gctttgtttgggagtttggaggggaagggaggggatggctttga 34651916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 28437361 - 28437403
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| |||| |||||||||||| |||||||||||||||||||    
T  28437361 gctttgtttgagagtttggaggggaagggaggggagggctttg 28437403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 532
Target Start/End: Complemental strand, 3658728 - 3658676
Alignment:
Q  480 aaattcttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| |||| ||||| ||||||||||||||||| | |||||||||||| ||||    
T  3658728 aaatacttaggctttgtttgggagtttggaggggaggggaggggagggttttg 3658676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Original strand, 35902075 - 35902111
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  35902075 tttgggagtttggaggggaagggaggggagggttttg 35902111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 44690118 - 44690082
Alignment:
Q  496 tttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  44690118 tttgggaatttggaggggaagggaggggagggctttg 44690082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 29241648 - 29241694
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggcttt 531  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  29241648 cttaggctttgtttgggagtttggaggggaagggaggggagggcttt 29241694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 4909700 - 4909742
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||    
T  4909700 gctttgtttgggagtttggaggggaagggaggcgagggctttg 4909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 2365810 - 2365761
Alignment:
Q  484 tcttacgctttatttgggagtttggagggaaagggaggggagggctttga 533  Q
    ||||| ||||| ||||||||||||||||| | |||||||||||| |||||    
T  2365810 tcttaggctttgtttgggagtttggaggggaggggaggggagggttttga 2365761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 1845 - 1798
Alignment:
Q  485 cttacgctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| ||||| |||| |||||||||||| |||||||||||||||||||    
T  1845 cttaggctttgtttgagagtttggaggggaagggaggggagggctttg 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Original strand, 82669 - 82711
Alignment:
Q  490 gctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    ||||| |||| |||||||||||| |||||||||||||||||||    
T  82669 gctttctttgtgagtttggagggtaagggaggggagggctttg 82711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Complemental strand, 400 - 359
Alignment:
Q  491 ctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| |||| |||||||||||| |||||||||||||||||||    
T  400 ctttgtttgagagtttggaggggaagggaggggagggctttg 359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 2193 - 2234
Alignment:
Q  491 ctttatttgggagtttggagggaaagggaggggagggctttg 532  Q
    |||| |||| |||||||||||| |||||||||||||||||||    
T  2193 ctttgtttgagagtttggaggggaagggaggggagggctttg 2234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University