View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_low_4 (Length: 391)
Name: NF21241_low_4
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 42422296 - 42421918
Alignment:
| Q |
13 |
aaaattataataagatgtgataacataaacatacaattatgcgcaatagaaaagcagaaagacgggcacattagtaacgtgcccgtctttacgctagcac |
112 |
Q |
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| T |
42422296 |
aaaattataataagatgtgataacataaacatacaattatgcgcaatagaaaagcagaaagacgggcacattagtaacgtgcccgtctttacgctagcac |
42422197 |
T |
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| Q |
113 |
tgattaagagttaaaagaaaagacaagtgccgggtattataaaatcattcataagatgtcacttaatagtttaaactaagttaaaagagttcttgaagtg |
212 |
Q |
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| T |
42422196 |
tgattaagagttaaaagaaaagacaagtgccgggtattataaaatcattcataagatgtcacttaatagtttaaactaagttaaaagagttcttgaagtg |
42422097 |
T |
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| Q |
213 |
ccattggagcctgcataaaaatttgacccttactaccccattcttctaaattaagttaaatcacagcaaaatgtatccatgcttcaactctaaagggctc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422096 |
ccattggagcctgcataaaaatttgacccttactaccccattcttctaaattaagttaaatcacagcaaaatgtatccatgcttcaactctaaagggctc |
42421997 |
T |
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| Q |
313 |
ttgttagcctttcacctcataacttaagcttttaggagagttggtgtttggaacccagacaagttgaaatgaaaggaag |
391 |
Q |
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| T |
42421996 |
ttgttagcctttcacctcataacttaagcttttaggagagttggtgtttggaacccagacaagttgaaatgaaaggaag |
42421918 |
T |
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