View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_low_7 (Length: 328)
Name: NF21241_low_7
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 53489118 - 53489434
Alignment:
| Q |
8 |
tttttatatttaaattattatctcaagatttgtgaaatttataaaaacggtaaaataaataagctctatcttagtatttgatgtgctagttgattccatt |
107 |
Q |
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| T |
53489118 |
tttttatgtttaaattattatctcaagatttttaaaatttataaaaacggtccaataaataagctctatcttaatatt-gatgtgctatttgattccatt |
53489216 |
T |
|
| Q |
108 |
atctaaacaaagaatttgaaaataaacattttgaaattaagaaacttacacaacatgtgcaggattccagagaaaagaataggtatgaaaacttgtagtt |
207 |
Q |
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| T |
53489217 |
atccaaacaaagaatttgaaa-taaacattttgaaatttagaaacttacacaacatgtgcaggattccagagaaaagaataggtatgaaaacttgtagtt |
53489315 |
T |
|
| Q |
208 |
ggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaaga |
307 |
Q |
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| T |
53489316 |
gggtcaaaccataaatagaattgttgctctctgtcccctttgccttgggtgtacacatttgtatgaactatgtaaggatcaccactcaaatttcccaaga |
53489415 |
T |
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| Q |
308 |
attcaaagtctatttcatc |
326 |
Q |
| |
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| T |
53489416 |
attcaaagtctatttcatc |
53489434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 53492732 - 53492634
Alignment:
| Q |
228 |
ttgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtctatttcatc |
326 |
Q |
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| T |
53492732 |
ttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatttcatc |
53492634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 151 - 326
Target Start/End: Complemental strand, 53499114 - 53498939
Alignment:
| Q |
151 |
acttacacaacatgtgcaggattccagagaaaagaataggtatgaaaacttgtagttggatcaaaccataaatagaattgttgctctctgtctcctttgc |
250 |
Q |
| |
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|||||||||| | || ||||||||| |||| || || || |||||| || |||||| |||||||| | || |||||||||||||||| ||||||| |
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| T |
53499114 |
acttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgc |
53499015 |
T |
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| Q |
251 |
cttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtctatttcatc |
326 |
Q |
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| T |
53499014 |
cttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatctcatc |
53498939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 52590825 - 52590713
Alignment:
| Q |
214 |
aaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaattcaa |
313 |
Q |
| |
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| T |
52590825 |
aaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggatcaccacttaagttacccaaaaattcaa |
52590726 |
T |
|
| Q |
314 |
agtctatttcatc |
326 |
Q |
| |
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| ||||||||||| |
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| T |
52590725 |
aatctatttcatc |
52590713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 53502192 - 53502077
Alignment:
| Q |
211 |
tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt |
310 |
Q |
| |
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|||||||||| |||||||||||| || |||| |||||||||||| || | ||||| || |||| ||||| || |||||||| | |||||| | |||| |
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| T |
53502192 |
tcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcctagaaatt |
53502093 |
T |
|
| Q |
311 |
caaagtctatttcatc |
326 |
Q |
| |
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|| ||||||| ||||| |
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| T |
53502092 |
catagtctatctcatc |
53502077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 53495103 - 53494981
Alignment:
| Q |
204 |
agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttccc |
303 |
Q |
| |
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||||||||||||||||| || ||||||||| ||||| | |||||| ||||| |||||||||| |||| |||| || || ||||||| ||| || |
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| T |
53495103 |
agttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccct |
53495004 |
T |
|
| Q |
304 |
aagaattcaaagtctatttcatc |
326 |
Q |
| |
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|||||||||||||| || ||||| |
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| T |
53495003 |
aagaattcaaagtcaatctcatc |
53494981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 37188696 - 37188574
Alignment:
| Q |
204 |
agttggatcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttccc |
303 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||||| |||||| | |||||||||| |||| ||||| || ||||||||||| |||||| |
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| T |
37188696 |
agttgggtcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttccc |
37188597 |
T |
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| Q |
304 |
aagaattcaaagtctatttcatc |
326 |
Q |
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|||||||||||||| |||||||| |
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| T |
37188596 |
aagaattcaaagtcaatttcatc |
37188574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 16942245 - 16942130
Alignment:
| Q |
211 |
tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||||| ||||| ||| | || || ||||||| || ||||||||||||||||| || || | |||| |
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| T |
16942245 |
tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt |
16942146 |
T |
|
| Q |
311 |
caaagtctatttcatc |
326 |
Q |
| |
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|||||||||||||||| |
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| T |
16942145 |
caaagtctatttcatc |
16942130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 17012910 - 17012795
Alignment:
| Q |
211 |
tcaaaccataaatagaattgttgctctctgtctcctttgccttgggtgtacacattggtatgaactatgtaaggatcaccactcaaatttcccaagaatt |
310 |
Q |
| |
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|||||||| |||||||||||||||||||| | ||||| ||||| ||| | || || ||||||| || ||||||||||||||||| || || | |||| |
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| T |
17012910 |
tcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaatt |
17012811 |
T |
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| Q |
311 |
caaagtctatttcatc |
326 |
Q |
| |
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|||||||||||||||| |
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|
| T |
17012810 |
caaagtctatttcatc |
17012795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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