View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_low_8 (Length: 293)
Name: NF21241_low_8
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 27155151 - 27154892
Alignment:
| Q |
12 |
atgaataactataaaattgagacaaaatcattacctgatttaatgtggaagctaccagggggtggtatatagggtccaacatatgcatcccctttcgttt |
111 |
Q |
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| T |
27155151 |
atgaataactataaaattgagacaaaatcattacttgatttaatgtggaagctaccagggggtggtatatagggtccaacatatgcatcccctttcgttt |
27155052 |
T |
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| Q |
112 |
tcttcttcctaaacgcnnnnnnnncagctgccacaactatggcgacaaccaaaactgctgcaatggcataagcagctatttcaccgggcgtgtggccaga |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27155051 |
tcttcttcctaaacgcaaaaaaaacagctgccacaactatggcgacaaccaaaactgcggcaatggcataagcagctatttcaccgggcgtgtggccaga |
27154952 |
T |
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| Q |
212 |
ggaatgagaactccctgattttgcatgcattgctttatgtggcgaatccttcgaggatgt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27154951 |
ggaatgagaactccctgattttgcatgcattgctttatgtggcgaatccttcgaggatgt |
27154892 |
T |
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