View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21241_low_9 (Length: 269)
Name: NF21241_low_9
Description: NF21241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21241_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 36956548 - 36956350
Alignment:
| Q |
52 |
aatgattaacattttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatga |
151 |
Q |
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| T |
36956548 |
aatgaataacatcttgatcaggtttactttcagtttgtgatgccaagaaaagaaaagggtagtgagaaatgtaccgcaatggcttgctagttgatgatga |
36956449 |
T |
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| Q |
152 |
tggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataac |
250 |
Q |
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| T |
36956448 |
tggaaggaaaagaagcatatataaaaaaatcacaaccgcaacaaaaatcagagccataaccagaaacacatttgccaaccaattaagttcactaataac |
36956350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 36935681 - 36935523
Alignment:
| Q |
65 |
ttgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaaga |
164 |
Q |
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| T |
36935681 |
ttgatcaggtttactttcagttcgtgatgccaaaaaaagatatggataatgagaaatgtaccgcaaggggttgctagttgatggtgatggaaggaaaaga |
36935582 |
T |
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| Q |
165 |
agcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatt |
223 |
Q |
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| T |
36935581 |
agcacatataacaaaatcacaacggcgacaaaaatcagtgccataaccagaaacacatt |
36935523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 36948425 - 36948274
Alignment:
| Q |
99 |
aaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaagcatatatnnnnnnntcacaaccgcaacaaaaa |
198 |
Q |
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| T |
36948425 |
aaaagaaaggggtagtaggaaatgtaccgcaatggtatgctagttgatgatgatggaaggaaaaggagcatatataaaagaatctcaaccacaacaaaaa |
36948326 |
T |
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| Q |
199 |
ttagagccataaccagaaacacatttgccaaccaagtaagttcactaataac |
250 |
Q |
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| T |
36948325 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataac |
36948274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 37079377 - 37079445
Alignment:
| Q |
182 |
cacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataac |
250 |
Q |
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| T |
37079377 |
cacaaccacaaccaaaattgaagctacaaccagaaacacatttgccaaccaagtaagttcactgataac |
37079445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 250
Target Start/End: Original strand, 12493290 - 12493474
Alignment:
| Q |
66 |
tgatcaggtttactttcagttagtgatgccaagaaaagataagggtagtgagaaatgtaccacaatggcttgctagttgatgatgatggaaggaaaagaa |
165 |
Q |
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| T |
12493290 |
tgatcatgtttactttcagttcgtgatgccaaaaaaagataaaggtagtgagaaatgtaccgcaatggcttgctagttgatgatgatggaaggaaactga |
12493389 |
T |
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| Q |
166 |
gcatatatnnnnnnntcacaaccgcaacaaaaattagagccataaccagaaacacatttgccaaccaagtaagttcactaataac |
250 |
Q |
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| T |
12493390 |
gcatatataacgcaatcacaaccgcaataaaaatcaatgccataaccagagacacatttgacaaccaagtaagttcactaataac |
12493474 |
T |
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