View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_10 (Length: 548)

Name: NF21242_high_10
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_10
NF21242_high_10
[»] chr8 (5 HSPs)
chr8 (278-531)||(7094521-7094774)
chr8 (309-531)||(7098254-7098476)
chr8 (2-211)||(7094841-7095050)
chr8 (161-210)||(29821104-29821153)
chr8 (309-357)||(29821255-29821301)
[»] chr3 (3 HSPs)
chr3 (278-531)||(8377027-8377280)
chr3 (2-211)||(8376751-8376960)
chr3 (309-374)||(11035898-11035963)
[»] chr1 (8 HSPs)
chr1 (278-531)||(22362254-22362507)
chr1 (309-482)||(41314684-41314857)
chr1 (161-208)||(33885424-33885471)
chr1 (309-384)||(33885575-33885650)
chr1 (309-384)||(33958602-33958677)
chr1 (161-208)||(33958781-33958828)
chr1 (476-531)||(33885841-33885893)
chr1 (476-531)||(33958359-33958411)
[»] chr5 (4 HSPs)
chr5 (309-482)||(37627819-37627992)
chr5 (309-482)||(37806942-37807121)
chr5 (161-211)||(37807222-37807272)
chr5 (161-206)||(37628097-37628142)
[»] chr7 (8 HSPs)
chr7 (318-482)||(19633345-19633509)
chr7 (309-482)||(1609254-1609431)
chr7 (309-482)||(2186619-2186796)
chr7 (161-211)||(19633621-19633671)
chr7 (164-206)||(28386638-28386680)
chr7 (309-384)||(21270495-21270567)
chr7 (309-384)||(48189367-48189436)
chr7 (473-531)||(48189115-48189169)
[»] chr4 (2 HSPs)
chr4 (159-210)||(15424763-15424814)
chr4 (476-531)||(11993205-11993257)
[»] scaffold0627 (1 HSPs)
scaffold0627 (318-373)||(3342-3397)
[»] chr2 (1 HSPs)
chr2 (309-357)||(19214968-19215016)
[»] scaffold0042 (5 HSPs)
scaffold0042 (163-210)||(6590-6637)
scaffold0042 (163-210)||(14002-14049)
scaffold0042 (318-373)||(6427-6481)
scaffold0042 (162-208)||(6682-6728)
scaffold0042 (162-208)||(14094-14140)
[»] chr6 (1 HSPs)
chr6 (151-194)||(19990271-19990314)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 278 - 531
Target Start/End: Complemental strand, 7094774 - 7094521
Alignment:
Q  278 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 377  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094774 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 7094675  T
Q  378 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094674 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 7094575  T
Q  478 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7094574 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 7094521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 309 - 531
Target Start/End: Complemental strand, 7098476 - 7098254
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098476 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 7098377  T
Q  409 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggggacgtgtatttacagagaaaacaata 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098376 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggggacgtgtatttacagagaaaacaata 7098277  T
Q  509 atgtaacctcctttcctagttac 531  Q
    |||||||||||||||||||||||    
T  7098276 atgtaacctcctttcctagttac 7098254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 7095050 - 7094841
Alignment:
Q  2 gagcagaacctgtgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctggtgcttgaagtacttcaataagagt 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7095050 gagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataagagt 7094951  T
Q  102 tggaggtattagagttattagttaagaaataaatgaacgttgtcgggactttctctagtgtcagtttcgaggacgaaactattttaggtgggtagaatgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7094950 tggaggtattagagttattagttaagaaataaatgaacgttgtcgagactttctctagtgccagtttcgaggacgaaactattttaggtgggtagaatgt 7094851  T
Q  202 aagatcccgg 211  Q
    ||||||||||    
T  7094850 aagatcccgg 7094841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 29821104 - 29821153
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 210  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29821104 gtcagtttcgaggacgaaactattttaggtaggtagaatgtaagatcccg 29821153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 29821255 - 29821301
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgt 357  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||    
T  29821255 ctttcaaattatatagccaaaattcattatactaat--ttaaatagtgt 29821301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 278 - 531
Target Start/End: Original strand, 8377027 - 8377280
Alignment:
Q  278 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 377  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377027 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 8377126  T
Q  378 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377127 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 8377226  T
Q  478 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8377227 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 8377280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 8376751 - 8376960
Alignment:
Q  2 gagcagaacctgtgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctggtgcttgaagtacttcaataagagt 101  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8376751 gagcagaacgtctgaatgcacctagaggcctgtattcaattgtgggaaaggaaactttcaatttgtattatcctgttgcttgaagtacttcaataagagt 8376850  T
Q  102 tggaggtattagagttattagttaagaaataaatgaacgttgtcgggactttctctagtgtcagtttcgaggacgaaactattttaggtgggtagaatgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8376851 tggaggtattagagttattagttaagaaataaatgaacgttgtcgagactttctctagtgccagtttcgaggacgaaactattttaggtgggtagaatgt 8376950  T
Q  202 aagatcccgg 211  Q
    ||||||||||    
T  8376951 aagatcccgg 8376960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 11035963 - 11035898
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttat 374  Q
    |||||||| |||||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||    
T  11035963 ctttcaaattatatagccaaaatccattagactaattattatatagtgtatcctataactatttat 11035898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 278 - 531
Target Start/End: Original strand, 22362254 - 22362507
Alignment:
Q  278 ttgagtgataatatatcattttgnnnnnnnnctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 377  Q
    |||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362254 ttgagtgataatatattattttgttttttttctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcc 22362353  T
Q  378 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362354 tactatttttatgtgtgcacgtgtagaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaa 22362453  T
Q  478 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22362454 atggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 22362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 309 - 482
Target Start/End: Complemental strand, 41314857 - 41314684
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41314857 ctttcaaagtatatagccaaaattcattatattaattattaaatggggtaccctataactatttattcctactatttttatgtgtgcacgtgtagatttt 41314758  T
Q  409 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41314757 ctcatctttatctcatgttagtattaatttaattaagtataatgatcaaccaatagtatagaacaagaaatggg 41314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 33885424 - 33885471
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 208  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  33885424 gtcagttttgaggacgaaattattttaggtgggtagaatgtaagatcc 33885471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 33885575 - 33885650
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 384  Q
    |||||||| |||||||||||||| |||| || || |||||| |||||||||||||||| ||||||| |||| ||||    
T  33885575 ctttcaaattatatagccaaaatccattgtactatttattagatagtgtaccctataattatttatgcctattatt 33885650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 33958677 - 33958602
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 384  Q
    |||||||| |||||||||||||| |||| || || |||||| |||||||||||||||| ||||||| |||| ||||    
T  33958677 ctttcaaattatatagccaaaatccattgtactatttattagatagtgtaccctataattatttatgcctattatt 33958602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 33958828 - 33958781
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 208  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  33958828 gtcagttttgaggacgaaattattttaggtgggtagaatgtaagatcc 33958781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 531
Target Start/End: Original strand, 33885841 - 33885893
Alignment:
Q  476 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||||||||||    
T  33885841 aaatggggacgtgtatttacagaggaaac---aatgtaacctcctttcctagttac 33885893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 33958411 - 33958359
Alignment:
Q  476 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||||||||||    
T  33958411 aaatggggacgtgtatttacagaggaaac---aatgtaacctcctttcctagttac 33958359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 309 - 482
Target Start/End: Complemental strand, 37627992 - 37627819
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37627992 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattc 37627893  T
Q  409 ctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37627892 ctcatctttatctcatgttagtatcaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 37627819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 309 - 482
Target Start/End: Complemental strand, 37807121 - 37806942
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttat------gtgtgcacgtgta 402  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||||||||||    
T  37807121 ctttcgaagtatatagccaaaattcattatattaattattaaatagtgtaacctataactatttattcctactatttttatttttatgtgtgcacgtgta 37807022  T
Q  403 gaatttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37807021 gaattcctcatctttatctcatgttagtatcaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 37806942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 37807272 - 37807222
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccgg 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37807272 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagatcccgg 37807222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 37628142 - 37628097
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagat 206  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  37628142 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagat 37628097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 318 - 482
Target Start/End: Complemental strand, 19633509 - 19633345
Alignment:
Q  318 tatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaatttctcatcttt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19633509 tatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatttttatgtgtgcacgtgtagaattgctcatcttt 19633410  T
Q  418 atctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19633409 atctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 19633345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 309 - 482
Target Start/End: Complemental strand, 1609431 - 1609254
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataacta----tttattcctactatttttatgtgtgcacgtgtaga 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  1609431 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtaga 1609332  T
Q  405 atttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1609331 attcctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 1609254  T

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Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 309 - 482
Target Start/End: Original strand, 2186619 - 2186796
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataac----tatttattcctactatttttatgtgtgcacgtgtaga 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  2186619 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactaactatttattcctactatttttatgtgtgcacgtgtgga 2186718  T
Q  405 atttctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaagaaatggg 482  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2186719 attcctcatctttatctcatgttagtattaatttaattaagtataatgatcagccaatagtatagaacaggaaatggg 2186796  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 19633671 - 19633621
Alignment:
Q  161 gtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccgg 211  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19633671 gtcagttttgaggacgaaactattttaggtgggtagaatgtaagatcccgg 19633621  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 28386638 - 28386680
Alignment:
Q  164 agtttcgaggacgaaactattttaggtgggtagaatgtaagat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28386638 agtttcgaggacgaaactattttaggtgggtagaatgtaagat 28386680  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 21270567 - 21270495
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 384  Q
    ||||||||||||||||||||||| ||||| |   ||||||||||| |||||||||||||||||||| |||| ||||    
T  21270567 ctttcaaagtatatagccaaaatccattaca---attattaaataatgtaccctataactatttatgcctattatt 21270495  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 48189436 - 48189367
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgtaccctataactatttattcctactatt 384  Q
    |||||||||||||||||||||||  |||| |      ||||||||||||||||||||||||||||| |||| ||||    
T  48189436 ctttcaaagtatatagccaaaatctattaca------attaaatagtgtaccctataactatttatgcctattatt 48189367  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 531
Target Start/End: Complemental strand, 48189169 - 48189115
Alignment:
Q  473 aagaaatggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    ||||||||||||| |||||||| | ||||||||||   |||||||||||||||||||||    
T  48189169 aagaaatggggacatgtatttaaa-agaaaacaat---gtaacctcctttcctagttac 48189115  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 15424763 - 15424814
Alignment:
Q  159 gtgtcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15424763 gtgttagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 15424814  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 531
Target Start/End: Complemental strand, 11993257 - 11993205
Alignment:
Q  476 aaatggggacgtgtatttacagagaaaacaataatgtaacctcctttcctagttac 531  Q
    |||||||||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  11993257 aaatggggacgtgtatttgcagagaaaac---aatgtaacctcctttcctagttac 11993205  T

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Target: scaffold0627 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 3397 - 3342
Alignment:
Q  318 tatatagccaaaattcattatattaattattaaatagtgtaccctataactattta 373  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  3397 tatatagccaaaatccattatactaattattaaatagtgtaccttataactattta 3342  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 19214968 - 19215016
Alignment:
Q  309 ctttcaaagtatatagccaaaattcattatattaattattaaatagtgt 357  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19214968 ctttcaaattatatagccaaaattcattatactaattattaaatagtgt 19215016  T

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Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 6637 - 6590
Alignment:
Q  163 cagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 210  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6637 cagttttgaggacgaaaatattttaggtgggtagaatgtaagatcccg 6590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 14049 - 14002
Alignment:
Q  163 cagtttcgaggacgaaactattttaggtgggtagaatgtaagatcccg 210  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  14049 cagttttgaggacgaaaatattttaggtgggtagaatgtaagatcccg 14002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 6481 - 6427
Alignment:
Q  318 tatatagccaaaattcattatattaattattaaatagtgtaccctataactattta 373  Q
    |||||||||||||| ||||| | |||||||| ||||||||||| ||||||||||||    
T  6481 tatatagccaaaatccattacactaattatt-aatagtgtaccttataactattta 6427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 6728 - 6682
Alignment:
Q  162 tcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 208  Q
    ||||||| |||| |||||||||||||||||| |||||||||| ||||    
T  6728 tcagttttgagggcgaaactattttaggtggatagaatgtaacatcc 6682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 14140 - 14094
Alignment:
Q  162 tcagtttcgaggacgaaactattttaggtgggtagaatgtaagatcc 208  Q
    ||||||| |||| |||||||||||||||||| |||||||||| ||||    
T  14140 tcagttttgagggcgaaactattttaggtggatagaatgtaacatcc 14094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 19990314 - 19990271
Alignment:
Q  151 tttctctagtgtcagtttcgaggacgaaactattttaggtgggt 194  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  19990314 tttctctaatgtcagtttcgaggacgaaactattttaggtgggt 19990271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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