View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_102 (Length: 237)
Name: NF21242_high_102
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_102 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 110588 - 110807
Alignment:
| Q |
18 |
atcacacttttacataacaggattgtgtgtgctgctagcagatcaagagatgacagatatgcatgaaaataccactatgcctggctgtgacgacgatatc |
117 |
Q |
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| T |
110588 |
atcacactttcacataacaggattgtgtgtgctgctagcagatcaagagatgacagatatgcatgaaaataccactatgcctggctgtgacgacgatatc |
110687 |
T |
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| Q |
118 |
cttgaaagtgctctcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattgaagatg |
217 |
Q |
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| T |
110688 |
cttgaaagtgctctcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatg |
110787 |
T |
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| Q |
218 |
taaagaattactacgtaaga |
237 |
Q |
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| T |
110788 |
taaagaattactacgtaaga |
110807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 48772248 - 48772346
Alignment:
| Q |
133 |
gatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattgaagatgtaaagaattactac |
231 |
Q |
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| T |
48772248 |
gatgcagatcctctcaatgatagactaccattggagctccccttagatccctttgaaggaatgaagtttacatcaattgaagatgtaaagaaatactac |
48772346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 20647280 - 20647064
Alignment:
| Q |
21 |
acacttttacataacaggattgtgtgtgctgctagcagatcaagagatgacagatatgcatgaaaataccactatgcctggctgtgacgacgatatcctt |
120 |
Q |
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| T |
20647280 |
acacttttacataacatgattgtgtgtactgctagtagatcaagagatgacagatatgcatgaaaataccactatgcctggctgtgacgacaatatcctt |
20647181 |
T |
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| Q |
121 |
gaaagtgctctcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattgaagatgtaa |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20647180 |
gaaattgctctcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgaaggaatggactttgcatcaattgaagatgtaa |
20647081 |
T |
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| Q |
221 |
agaattactacgtaaga |
237 |
Q |
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| T |
20647080 |
agaattactacgtaaga |
20647064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 19328898 - 19329016
Alignment:
| Q |
112 |
gatatccttgaaagtgctctcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattg |
211 |
Q |
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| T |
19328898 |
gatatacttgaaaatgctattgatgcatattctctcaatgatagactaccatcatagctccccttagggccctttgaaggaattgagtttgtatcaattg |
19328997 |
T |
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| Q |
212 |
aagatgtaaagaattacta |
230 |
Q |
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| T |
19328998 |
aagatttaaaggattacta |
19329016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 63784 - 63889
Alignment:
| Q |
131 |
tcgatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattgaagatgtaaagaattacta |
230 |
Q |
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||||||||||| ||||||||||||||| | |||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
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| T |
63784 |
tcgatgcagattctctcaatgatagaccaccatcagagctccccttagagccctttgaaggaatggagtttgcatcaattgaagatgtaaaggattacta |
63883 |
T |
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| Q |
231 |
cgtaag |
236 |
Q |
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| T |
63884 |
cgtaag |
63889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 16080145 - 16080243
Alignment:
| Q |
133 |
gatgcagatcctctcaatgatagactatcatcagagatcccctcagagccctttgagggaatggactttgcatcaattgaagatgtaaagaattactac |
231 |
Q |
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||||||||||||||||||||||||||| ||| || |||| | |||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| |
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| T |
16080145 |
gatgcagatcctctcaatgatagactaccattggaactcccattagagccctttgaatgaatggagtttacatcaattgaagatgtaaagaaatactac |
16080243 |
T |
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