View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_106 (Length: 229)
Name: NF21242_high_106
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_106 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 5502793 - 5502991
Alignment:
| Q |
16 |
acagaaaagctgaagatggcgtagatggagatgacgacaatgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgt |
115 |
Q |
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| T |
5502793 |
acagaaaacatgaagatggtgtagatagcgatgacgacaatgaaagattgggattatacacaagcatagttgtcgggtatattactggcttctggattgt |
5502892 |
T |
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| Q |
116 |
gtgtggaagcttgatattaaaggggtcttggagacatgcatatttcaattttctatatgacatgagagataaacttctggtttttatggcagttaactt |
214 |
Q |
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| T |
5502893 |
gtgtggaagcttggtgttaaagaggtcttggagacatgcatatttcaattttgtatatgacctgagagataaacttctgattttgatggcagttaactt |
5502991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 5497759 - 5497947
Alignment:
| Q |
26 |
tgaagatggcgtagatggagatgacgacaatgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagc |
125 |
Q |
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| T |
5497759 |
tgaagatggtgttgatggagatgacaacaatgaaagatggggattatatgcaagcatagcagttgggtatatcactggcttctggattgtgtgtggaagc |
5497858 |
T |
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| Q |
126 |
ttgatattaaaggggtcttggagacatgcatatttcaattttctatatgacatgagagataaacttctggtttttatggcagttaactt |
214 |
Q |
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| T |
5497859 |
ttgatgttaaagaggtcttggagacatgcatatttcaattctgtatatgacatgaaagataaacttctggttttgattgcggttaactt |
5497947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 5469226 - 5469411
Alignment:
| Q |
26 |
tgaagatggcgtagatggagatgacgacaatgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagc |
125 |
Q |
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| T |
5469226 |
tgaagatggtgcagatgaagatgacaacagtgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagc |
5469325 |
T |
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| Q |
126 |
ttgatattaaaggggtcttggagacatgcatatttcaattttctatatgacatgagagataaacttctggtttttatggcagttaa |
211 |
Q |
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| T |
5469326 |
ttgatgttaaagaggtcttggagacatgcgtatttcaatttcatgtatgacacaagagataaagttctggttttcatggcggttaa |
5469411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 5486988 - 5487153
Alignment:
| Q |
28 |
aagatggcgtagatggagatgacgacaatgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagctt |
127 |
Q |
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| T |
5486988 |
aagatggtgttgatggagatgatgacaatgaaagattgggattgtatgcaagcatagctatcgggtatataactggtttctggattgtgtgtggaagctt |
5487087 |
T |
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| Q |
128 |
gatattaaaggggtcttggagacatgcatatttcaattttctatatgacatgagagataaacttct |
193 |
Q |
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| T |
5487088 |
ggtgttaaagaggtcttggagacatgcatatttcaattttttgtatgacatgagagataaacttct |
5487153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 5492019 - 5492174
Alignment:
| Q |
56 |
tgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagcttgatattaaaggggtcttggagacatgca |
155 |
Q |
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| T |
5492019 |
tgaaagatttggattatatgcaagcatagcagtcgggtatattaccggcttctggattgtgtgtggaagcttaatgctaaagaggtcttggagacatgca |
5492118 |
T |
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| Q |
156 |
tatttcaattttctatatgacatgagagataaacttctggtttttatggcagttaa |
211 |
Q |
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| T |
5492119 |
tatttcaattttgtatatgacacaagagataaacttctggttttgatggcaattaa |
5492174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 5478912 - 5479052
Alignment:
| Q |
56 |
tgaaagattgggattatatgcaagcatagcagtcgggtatattactggcttctggattgtgtgtggaagcttgatattaaaggggtcttggagacatgca |
155 |
Q |
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| T |
5478912 |
tgaaaggttggggttatatgcaagcatagatgtcgggtatatcactggcttttggattgtgtgtggaagcatgatgttaaagaggtcttggagacatgca |
5479011 |
T |
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| Q |
156 |
tatttcaattttctatatgacatgagagataaacttctggt |
196 |
Q |
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| T |
5479012 |
tatttcaattttgtatatgaaaccagagataaacttatggt |
5479052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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