View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_107 (Length: 225)
Name: NF21242_high_107
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_107 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 46368037 - 46368246
Alignment:
| Q |
1 |
atatttattggaatagcttaaatgaatttcaataattggaagtnnnnnnnnnt-aggattgatgatacatacagtgttgccacatgtttccagcaagatc |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46368037 |
atatttattggaatagcttaaatgaatttcaataattggaagtaaaaaaaaattaggattgatgatacatacagtgttgccacatgtttccagcaagatc |
46368136 |
T |
|
| Q |
100 |
ttcagccttcttggtagcttcggcggctttctttccccatttaccaagaacatctttcaccgaatctaaagtatctgcgaaatcaaaactttaattgaga |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46368137 |
ttcagccttcttggtagcttcggcggctttctttccccatttaccaagaacatctttcaccgaatctaaagtatctgcgaaatcaaaactttaattgaga |
46368236 |
T |
|
| Q |
200 |
aacaagaaat |
209 |
Q |
| |
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|||||||||| |
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| T |
46368237 |
aacaagaaat |
46368246 |
T |
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