View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_11 (Length: 542)
Name: NF21242_high_11
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_11 |
 | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Original strand, 32464972 - 32465495
Alignment:
| Q |
17 |
aaaggatggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32464972 |
aaaggatggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtgga |
32465071 |
T |
|
| Q |
117 |
gagaatatgagtagtgtggaggttgaggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
32465072 |
gagaatatgagtagtgtggaggttgaggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccggatgagttttggggcgaga |
32465171 |
T |
|
| Q |
217 |
cgccgtgtgcgtttgtgagtttgaatgacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattt |
316 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32465172 |
cgccgtgtgcatttgtgagtttgaatgacgagttgaaggaagaggagataccgacggagaaggaggttaaggagttttgtagagagaagttgccacattt |
32465271 |
T |
|
| Q |
317 |
tatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgctagggctatgggg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32465272 |
tatggtgcctaagacggttgtgtttaaggaggagttgccaaagacttcaactggaaagattcaaaaacatgtgcttagaagggttgctagggctatgggg |
32465371 |
T |
|
| Q |
417 |
tccttgccaatactaccaccactactacttccaagtcgcatttaatcatgcaacatgc-------ttcccattaatgatttatgcatttttgagatgaag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32465372 |
tccttgccaatactaccaccactactacttccaagtcgcatttaatcatgcaacatgcttcccaattcccattaatgatttatgcatttttgagatgaag |
32465471 |
T |
|
| Q |
510 |
agggagagagtgagagagtataat |
533 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
32465472 |
agggagagaatgagagagtataat |
32465495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 32456164 - 32455775
Alignment:
| Q |
16 |
aaaaggatggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtgg |
115 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| |||||| ||| || |||||||| |||||||||| |||||| |||||||| ||||||||||||| || |
|
|
| T |
32456164 |
aaaagaatggttggttttatacgggtgatgttgcggttatgcatgaggatgggtatttggagattaaagataggtcaaaagatttgataataagtggcgg |
32456065 |
T |
|
| Q |
116 |
agagaatatgagtagtgtggaggttgaggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |
|
|
| T |
32456064 |
agagaatatgagtagtgtggaggttgagggggttttgtatatgcattcggcggttaaggaggcggcggtggtggcgagaccagatgatttttggggggag |
32455965 |
T |
|
| Q |
216 |
acgccgtgtgcgtttgtgagtttgaatgacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacatt |
315 |
Q |
| |
|
|||||||||| ||||||||||||||| || || |||||| | | || || ||||| || || ||| |||| |||||||||| |||||||||||| |||| |
|
|
| T |
32455964 |
acgccgtgtgggtttgtgagtttgaaagatgaattgaagaagaatgatattccgactgataatgagattaaggagttttgtaaagagaagttgccgcatt |
32455865 |
T |
|
| Q |
316 |
ttatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgcta |
405 |
Q |
| |
|
||||| ||||||| || ||||||||| | | || ||||||||||| |||||||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
32455864 |
ttatgatgcctaaaacaattgtgtttatgaaggaattgccaaagacatcaaccggaaaggttcaaaaacatgtgcttagaaaggttgcta |
32455775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 379
Target Start/End: Complemental strand, 32471892 - 32471537
Alignment:
| Q |
24 |
ggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtggagagaata |
123 |
Q |
| |
|
|||||||||||||| |||||||| || || || ||| | |||||||| | ||||| || |||||| ||||||||||||| || |||||||| |||||| |
|
|
| T |
32471892 |
ggttggttttacactggtgatgtaggtgtgatgcatgaagatgggtatttagagataaaagataggtcaaaagatgtgattattagtggtggtgagaatt |
32471793 |
T |
|
| Q |
124 |
tgagtagtgtggaggttgaggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagagacgccgtg |
223 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
32471792 |
tgagtagtgtggaggttgagtcggttttgtatggacatccggcggtgaatgaggcggcggtggtggcgagggaggatgagttttggggggagacaccgtg |
32471693 |
T |
|
| Q |
224 |
tgcgtttgtgagtttgaatgacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacattttatggtg |
323 |
Q |
| |
|
||| |||||||||||||| || | |||||||||| ||| ||||| |||||||| ||| | |||| ||||| |||| ||||| |||| |||||| |
|
|
| T |
32471692 |
tgcttttgtgagtttgaaagaagggttgaaggaaagggatataccaacggagaaagagatagttgagtactgtaggaagaatttgccgcattatatggtt |
32471593 |
T |
|
| Q |
324 |
cctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattca |
379 |
Q |
| |
|
|| || ||||| |||||||| || ||| | ||||||||||| ||||| || ||||| |
|
|
| T |
32471592 |
ccaaaaacggtggtgtttaaagatgagcttccaaagacttctaccgggaaaattca |
32471537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 24401 - 24790
Alignment:
| Q |
16 |
aaaaggatggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgataataagtggtgg |
115 |
Q |
| |
|
||||| ||||||||||||| || |||||||||| |||||| ||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24401 |
aaaagaatggttggttttatacaggtgatgttgcggttatgcatgaggatgggtatttggagattaaggataggttaaaagatgtgataataagtggtgg |
24500 |
T |
|
| Q |
116 |
agagaatatgagtagtgtggaggttgaggctgttttgtatatgcatccggcggttaaggaggcggcggtggtggcgaggccagatgagttttggggagag |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
24501 |
ggagaatatgagtagtgtggaagttgagggtgttttgtacatgcatcccgcggttaaggaggcggcggtggtggctaggccggatgatttttggggagag |
24600 |
T |
|
| Q |
216 |
acgccgtgtgcgtttgtgagtttgaatgacgagttgaaggaagaggagataccgacggagaaggaggttaaagagttttgtagagagaagttgccacatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| ||| | || || || || || | |||| |||| |||||||||| ||| |||||||||||| |
|
|
| T |
24601 |
acgccgtgtgcgtttgtgagtttgaaggatgaattgaatgaaaacgatattccaactgacatggagattaagaagttttgtagggaggagttgccacatt |
24700 |
T |
|
| Q |
316 |
ttatggtgcctaagacggttgtgtttaaggaagagttgccaaagacttcaaccggaaagattcaaaaacatgtgcttaggagggttgcta |
405 |
Q |
| |
|
||||| |||||| || ||||| | | | | || |||||||||||||||||||||||| || |||||||||||||||| | |||||||| |
|
|
| T |
24701 |
ttatgacgcctaaaacaattgtgatcatgaaggaattgccaaagacttcaaccggaaaggttaaaaaacatgtgcttagaaaggttgcta |
24790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 29003896 - 29003813
Alignment:
| Q |
20 |
ggatggttggttttacacgggtgatgttggggttatacataagaatgggtatatggagattaaggataggacaaaagatgtgat |
103 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||| |||| ||| |||| ||||| |||||| | ||||||||||| |
|
|
| T |
29003896 |
ggatggttggtttagaactggtgatgttggtgttatacataaagatggttatttggaaattaaagataggtctaaagatgtgat |
29003813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University