View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_12 (Length: 538)
Name: NF21242_high_12
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 21 - 448
Target Start/End: Complemental strand, 13168206 - 13167779
Alignment:
| Q |
21 |
attttgtgagtgtgtgagaaatttatatttggaatagcaaccatttgcaagaataatccatgggatagcctaaggtcccttttttcaggacatcaaatat |
120 |
Q |
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| T |
13168206 |
attttgtgagtgtgtgagaaatttatatttggaatagcaaccatttgcaagaataatccatgggatagcctaaggtcccttttttcaggacatcaaatat |
13168107 |
T |
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| Q |
121 |
ttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaacaaccttgagaatctactaaattatacattt |
220 |
Q |
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| T |
13168106 |
ttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaacaaccttgagaatctactaaattatacattt |
13168007 |
T |
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| Q |
221 |
atgttctcaaaacatggaataaacttagaagtaatttacgagatagattattgaaaagcgtccctaaaagagatatgtttattgtgactgtgagtggtcc |
320 |
Q |
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| T |
13168006 |
atgttctcaaaacatggaataaacttagaagtaatttacgatatagattattgataagtgtccctaaaagagatatgtttattgtgactgtgagtggtcg |
13167907 |
T |
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| Q |
321 |
taatgannnnnnnaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcg |
420 |
Q |
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| T |
13167906 |
taatgatttttttaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagacatttacttgtttatttagaagaattgatcg |
13167807 |
T |
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| Q |
421 |
aaagagtttcttgggttcacattagaag |
448 |
Q |
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| T |
13167806 |
aaagagtttcttgggttcacattagaag |
13167779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 12850540 - 12850397
Alignment:
| Q |
157 |
tttatattttggtgacccaatttcattgataaacaaccttgagaatctactaaattatacatttatgttctcaaaacatgga--ataaacttagaagtaa |
254 |
Q |
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| T |
12850540 |
tttatattttggtgacc-aatttctttgatgaacaaccttgagaatccactaaattataaatttatgttctgaaaacttggaatataaacttagaagtaa |
12850442 |
T |
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| Q |
255 |
tttacgagatagattattgaaaagcgtccctaaaagagatatgttt |
300 |
Q |
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| T |
12850441 |
-ttacgagataaattattgaagagtgtctttaaaagagatatgttt |
12850397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 465 - 526
Target Start/End: Complemental strand, 13167753 - 13167691
Alignment:
| Q |
465 |
aacgagggccatt-agaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
526 |
Q |
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| T |
13167753 |
aacgagggccatttagaaggttgaaattatattaaacctatgccctaatccagctcatgccta |
13167691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 12850399 - 12850317
Alignment:
| Q |
365 |
ttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
448 |
Q |
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| T |
12850399 |
ttttaacggggatgaggaagataaactt-tgcttgtttatttagaagaattgatcaaaagagtttcatgtatttacattagaag |
12850317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Complemental strand, 12850290 - 12850236
Alignment:
| Q |
473 |
ccattagaaggttgaaatt-atattaaacctatgccctaatccagctcatgccta |
526 |
Q |
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| T |
12850290 |
ccattagaaggttgaaatttatgtaaaacctatgacctaatccagctcatgccta |
12850236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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