View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_15 (Length: 529)
Name: NF21242_high_15
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 105 - 418
Target Start/End: Original strand, 25968284 - 25968599
Alignment:
| Q |
105 |
ttgtcaattgtcttcactcttgctgtt-atatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
203 |
Q |
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| T |
25968284 |
ttgtcaattgtcttcactcttgctgttgatatggtcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatca |
25968383 |
T |
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| Q |
204 |
ccagtgccaattccccc-ggcctccaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattt |
302 |
Q |
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| T |
25968384 |
ccagcgccaattccccccggtctcaaagcatacaacacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattt |
25968483 |
T |
|
| Q |
303 |
tgttcttcaagatgtttaattttcaaatcatgttgatcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctac |
402 |
Q |
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| T |
25968484 |
tgttcttcaagatgtttaattttcaaatcatgttcatcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctac |
25968583 |
T |
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| Q |
403 |
ttaaatcattgttcaa |
418 |
Q |
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| T |
25968584 |
ttaaatcattgttcaa |
25968599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 138 - 418
Target Start/End: Original strand, 25990387 - 25990664
Alignment:
| Q |
138 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagtgccaattcccccggcctccaagcatacaa |
237 |
Q |
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| T |
25990387 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctcggtctccaagcatacaa |
25990486 |
T |
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| Q |
238 |
cacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgttg |
337 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| | |||| |||||| || | |
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| T |
25990487 |
cacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaaaggatagattctgttcttcaagatgtgtgatttgcaaatcttgctc |
25990586 |
T |
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| Q |
338 |
atcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctacttaaatcattgttcaa |
418 |
Q |
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|||||| |||||||| ||| |||||| |||||| ||| |||||||||||||||||||||| || |||||||||||||| |
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| T |
25990587 |
atcaactctattctctaaactatgttcatcacctgaac---ttggatatatcatctcaaacctgctcaaatcattgttcaa |
25990664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 408 - 517
Target Start/End: Original strand, 25968613 - 25968722
Alignment:
| Q |
408 |
tcattgttcaagtcattgttttcaccggcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
507 |
Q |
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| T |
25968613 |
tcatttttcaagtcattgttttcaccagcttggtcggagttttctttttccttccggagacggattaggcctttcatggtgccatatgcatccagtcccc |
25968712 |
T |
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| Q |
508 |
acttttcctt |
517 |
Q |
| |
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|||||||||| |
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| T |
25968713 |
acttttcctt |
25968722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 520
Target Start/End: Original strand, 25990728 - 25990784
Alignment:
| Q |
464 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttcctttgc |
520 |
Q |
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| T |
25990728 |
gagacggattagacctttcattgtgccatatccgtcaactccccacttttcctttgc |
25990784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6898456 - 6898421
Alignment:
| Q |
19 |
cactggagaaaatctcacaggagacaatcctctccc |
54 |
Q |
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| T |
6898456 |
cactggagaaaatctcacgggagacaatcctctccc |
6898421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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