View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_2 (Length: 718)
Name: NF21242_high_2
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Complemental strand, 46920710 - 46920168
Alignment:
| Q |
11 |
cagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920710 |
cagagataagagaggtccaagtaacaacggtgcggaggtgagtgaatgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgac |
46920611 |
T |
|
| Q |
111 |
gaggtggttggagaggaaagatgggagtggggtgacatgtgtgcgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagct |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920610 |
gaggtggttggagaggaaagatggaagtggggtgacatgtgtgcgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagct |
46920511 |
T |
|
| Q |
211 |
gattcgagtaaactacctagtaggttttgaggatgtatgttcattgtgnnnnnnngatgatgttaaggttaaatggtgtatgagcgtttatttggatttt |
310 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920510 |
gattcgagtaaacaacctagtaggttttgaggatgtatgttcattgtg-ttttttgatgatgttaaggttaaatggtgtatgagcgtttatttggatttt |
46920412 |
T |
|
| Q |
311 |
ggtacgaattgcatcagttctcatgcagcgatgttgacttctcatgtttttcaacagatatttattttagtaacttnnnnnnnnnnnnnnnnnnnngagg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
46920411 |
ggtacgaattgcatcagttctcatgcagcgatgttgacttctcatgtttttcaacagatat---ttttagtaactt---gaagaagaagaagaaaggagg |
46920318 |
T |
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| Q |
411 |
agctaaattgagaaattatgctcttctcgatnnnnnnnttgttcgctcataaccaaacttctaaaaata-cctgcgagacttaagtcacgttgcgtaaac |
509 |
Q |
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| T |
46920317 |
agctaaattgagaaattatgctcttcttgat-aaaaaattgttcgctcctaaccaaacttctaaaaataccctgcgagacttaagtcactttgcgtaaat |
46920219 |
T |
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| Q |
510 |
taacttacgctcgttataaaccttgtgtgatttaactcacataggttataa |
560 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46920218 |
taacatacgctcgttataaaccttgtgtgagttaactcacataggttataa |
46920168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 582 - 701
Target Start/End: Complemental strand, 46919979 - 46919860
Alignment:
| Q |
582 |
tgaacaaagtgtcgcaattgatagaaaattgaaggttgaaacacttacaagtcaaaaatctttatatctaaaagtgtttggtaaagacatattgtcaaat |
681 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46919979 |
tgaacaaagtgtcgcaattgatagaaaattgaaggttgaaacacttacaagtcaaaaatctttatatctaaaagtgtttggtaaagacatattgtcaaat |
46919880 |
T |
|
| Q |
682 |
ggtctttgtgtgattgttct |
701 |
Q |
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|||||||||||||||||||| |
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| T |
46919879 |
ggtctttgtgtgattgttct |
46919860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 554
Target Start/End: Complemental strand, 46150501 - 46150397
Alignment:
| Q |
452 |
ttcgctcataaccaaacttctaaaaatacc--tgcgagacttaagtcacgttgcgtaaactaacttacgctcgttataaaccttgtgtgatttaactcac |
549 |
Q |
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||||||| |||||||||| |||||||||| |||| |||||||||||| ||||| | ||||| |||| |||||||| |||| |||| ||||||||| |
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| T |
46150501 |
ttcgctcccaaccaaacttttaaaaataccaatgcgtcacttaagtcacgctgcgtgagttaactcacgcatgttataaatcttgcgtgaattaactcac |
46150402 |
T |
|
| Q |
550 |
atagg |
554 |
Q |
| |
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|||| |
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|
| T |
46150401 |
gtagg |
46150397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 272; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 38310867 - 38310567
Alignment:
| Q |
11 |
cagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310867 |
cagagataagagaggtccaagtaacaacggtgcggaggtgagtgagtgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgac |
38310768 |
T |
|
| Q |
111 |
gaggtggttggagaggaaagatgggagtggggtgacatgtgtgcgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310767 |
gaggtggttggagaggaaagatgggagtggggtgacatgtgtgcgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagct |
38310668 |
T |
|
| Q |
211 |
gattcgagtaaactacctagtaggttttgaggatgtatgttcattgtgnnnnnnngatgatgttaaggttaaatggtgtatgagcgtttatttggatttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38310667 |
gattcgagtaaactacctagtaggttttgaggatgtatgttcattgtg-ttttttgatgatgttaaggttaaatggtgtatgagggtttatttggatttt |
38310569 |
T |
|
| Q |
311 |
gg |
312 |
Q |
| |
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|| |
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|
| T |
38310568 |
gg |
38310567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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