View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_20 (Length: 494)
Name: NF21242_high_20
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 40617318 - 40616835
Alignment:
| Q |
1 |
accttaaataatattcaactaattaattttaataaatctcaaactatatttaacaggaggagacggaggaggtgcttctcagtgcgatgagatattccat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40617318 |
accttaaataatattcaaataattaattttaataaatctcaaactatatttaacaggaggagacggaggaggtgcttctcagtgcgatgagatattccat |
40617219 |
T |
|
| Q |
101 |
agcaactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaatttattagaattagggcgtcgaacgggaggactg |
200 |
Q |
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| T |
40617218 |
agcaactcggaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaaaatttattagaattagggcgtcgaacgggaggactg |
40617119 |
T |
|
| Q |
201 |
tgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtggatggatctgc |
300 |
Q |
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| T |
40617118 |
tgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtggatggatctgc |
40617019 |
T |
|
| Q |
301 |
agctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagtagtggctaatatatat |
400 |
Q |
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| T |
40617018 |
agctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagtagtggctaatatatat |
40616919 |
T |
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| Q |
401 |
aattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcctttgcttct |
484 |
Q |
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| T |
40616918 |
aattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcctttgtttct |
40616835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 59 - 385
Target Start/End: Complemental strand, 40627971 - 40627646
Alignment:
| Q |
59 |
ggagacggaggaggtgcttctcagtgcgatgagatattccatagcaactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggt |
158 |
Q |
| |
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||||||||||||||| | ||||| |||||||| | || ||| |||||| |||||| | ||||| || || ||||| ||||||| ||||||||||| | |
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| T |
40627971 |
ggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagat |
40627872 |
T |
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| Q |
159 |
gtggaaaatttattagaattagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgc |
258 |
Q |
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| T |
40627871 |
gtggaaaaatgattagaatcacggcgaggaacgggaggagtgtgacggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacgc |
40627772 |
T |
|
| Q |
259 |
aggtcagccaccttgtcgtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatgg |
358 |
Q |
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| T |
40627771 |
aggtcagccaccttgtcataacaatattgtggatggatctgtatctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatgg |
40627672 |
T |
|
| Q |
359 |
actatggcttgaaagaatactcaagta |
385 |
Q |
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||||||||| ||| | |||||||||| |
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| T |
40627671 |
tctatggctt-aaaaattactcaagta |
40627646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 191 - 371
Target Start/End: Complemental strand, 40610633 - 40610453
Alignment:
| Q |
191 |
gggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgcaggtcagccaccttgtcgtaacaatattgtgg |
290 |
Q |
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||||||| |||||| ||||| ||||| || ||||||||||||||||||| |||||||| || |||||| | |||||||||||||||||||||||||||| |
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| T |
40610633 |
gggaggagtgtgacggcgaaggtggtggatgaatgtgattcagtgaatggttgtgatgaggagcatgcatggcagccaccttgtcgtaacaatattgtgg |
40610534 |
T |
|
| Q |
291 |
atggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaa |
371 |
Q |
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||||||||| |||||||||| ||| |||| || | |||| |||||||||| ||||||||||||||| |||| ||||||| |
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| T |
40610533 |
atggatctgtagctgtgtggaatgcattagggttaaatactgatgatggtgtggtaccagttacatggtctatagcttgaa |
40610453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 40610406 - 40610364
Alignment:
| Q |
404 |
taataagactaagcttaatttgcataaggtaaaattaagcttg |
446 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||| |
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| T |
40610406 |
taataagaacaagcttaatttgcataaggttaaattaagcttg |
40610364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 40641268 - 40641337
Alignment:
| Q |
95 |
ttccatagcaactcagaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggtgtggaa |
164 |
Q |
| |
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||||||||| ||||||||||| | ||||| | || ||||| ||||||| ||||||||||||||||||| |
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| T |
40641268 |
ttccatagctactcagaaagagtagtggcgctgtccactgggtggtacaacggaggttcaaggtgtggaa |
40641337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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