View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_24 (Length: 471)

Name: NF21242_high_24
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_24
NF21242_high_24
[»] chr8 (17 HSPs)
chr8 (35-189)||(21525354-21525508)
chr8 (35-188)||(22324593-22324746)
chr8 (35-189)||(35806790-35806944)
chr8 (35-190)||(33934347-33934502)
chr8 (35-189)||(26021391-26021546)
chr8 (35-189)||(42072424-42072578)
chr8 (35-185)||(42013872-42014022)
chr8 (58-189)||(19334778-19334910)
chr8 (35-167)||(21488084-21488216)
chr8 (57-167)||(43282851-43282962)
chr8 (34-167)||(24065291-24065424)
chr8 (45-188)||(10112042-10112187)
chr8 (46-119)||(16523172-16523245)
chr8 (58-185)||(16818974-16819105)
chr8 (62-189)||(2271196-2271318)
chr8 (59-107)||(16591377-16591425)
chr8 (136-167)||(34697469-34697500)
[»] chr2 (22 HSPs)
chr2 (35-188)||(29846439-29846592)
chr2 (35-189)||(42769736-42769890)
chr2 (38-189)||(14942025-14942176)
chr2 (36-189)||(14186417-14186570)
chr2 (58-189)||(19181544-19181675)
chr2 (35-189)||(40277266-40277420)
chr2 (262-364)||(38491723-38491823)
chr2 (81-189)||(1387312-1387421)
chr2 (35-188)||(3956567-3956722)
chr2 (62-188)||(6318463-6318592)
chr2 (70-188)||(40780050-40780171)
chr2 (93-189)||(3597903-3597999)
chr2 (59-190)||(33009665-33009799)
chr2 (58-189)||(14539705-14539838)
chr2 (62-164)||(43139766-43139870)
chr2 (69-189)||(41674718-41674841)
chr2 (93-188)||(23685406-23685503)
chr2 (36-96)||(3597869-3597929)
chr2 (62-188)||(28321708-28321836)
chr2 (396-448)||(38491846-38491897)
chr2 (93-164)||(25665244-25665316)
chr2 (106-188)||(32486239-32486323)
[»] chr7 (18 HSPs)
chr7 (33-189)||(29555915-29556071)
chr7 (35-189)||(44164721-44164875)
chr7 (35-188)||(34707113-34707266)
chr7 (45-190)||(24320427-24320572)
chr7 (35-189)||(10576669-10576823)
chr7 (35-189)||(29238121-29238275)
chr7 (50-189)||(32876523-32876662)
chr7 (35-177)||(34259526-34259668)
chr7 (35-170)||(29981091-29981226)
chr7 (45-188)||(33057645-33057789)
chr7 (62-188)||(19334565-19334693)
chr7 (45-188)||(17303102-17303248)
chr7 (45-188)||(10334173-10334318)
chr7 (62-188)||(26284383-26284510)
chr7 (62-141)||(15017817-15017896)
chr7 (62-162)||(9770682-9770782)
chr7 (62-110)||(43342485-43342533)
chr7 (36-91)||(41853205-41853260)
[»] chr4 (28 HSPs)
chr4 (35-189)||(49284353-49284507)
chr4 (35-189)||(1535767-1535921)
chr4 (45-189)||(25954746-25954890)
chr4 (33-189)||(35018932-35019087)
chr4 (45-190)||(34240988-34241133)
chr4 (36-189)||(37801243-37801396)
chr4 (33-189)||(36012162-36012317)
chr4 (70-189)||(52632514-52632633)
chr4 (35-188)||(17888528-17888683)
chr4 (70-185)||(46583554-46583669)
chr4 (51-162)||(16338207-16338318)
chr4 (35-188)||(31377385-31377539)
chr4 (124-188)||(16338311-16338375)
chr4 (49-190)||(46473987-46474130)
chr4 (45-189)||(50328790-50328936)
chr4 (35-167)||(20818584-20818717)
chr4 (62-183)||(9742538-9742661)
chr4 (92-188)||(322584-322682)
chr4 (58-158)||(10094394-10094495)
chr4 (35-112)||(36851365-36851442)
chr4 (57-188)||(54090176-54090308)
chr4 (45-188)||(11054448-11054595)
chr4 (59-141)||(47084056-47084138)
chr4 (35-189)||(12792209-12792365)
chr4 (62-167)||(19124743-19124849)
chr4 (59-188)||(33981997-33982130)
chr4 (81-188)||(35322728-35322837)
chr4 (35-67)||(46583529-46583561)
[»] chr5 (24 HSPs)
chr5 (35-188)||(16618548-16618701)
chr5 (35-188)||(38397595-38397748)
chr5 (35-190)||(6257388-6257543)
chr5 (35-189)||(23218481-23218635)
chr5 (35-189)||(37169011-37169165)
chr5 (35-185)||(15631613-15631764)
chr5 (35-189)||(39862465-39862619)
chr5 (37-188)||(8456943-8457096)
chr5 (36-189)||(36769053-36769207)
chr5 (38-188)||(25560309-25560460)
chr5 (55-185)||(614390-614522)
chr5 (62-188)||(10081140-10081268)
chr5 (45-164)||(33271258-33271377)
chr5 (60-188)||(42119617-42119747)
chr5 (58-167)||(6174762-6174873)
chr5 (38-165)||(29491395-29491521)
chr5 (45-159)||(10115185-10115300)
chr5 (59-189)||(27916133-27916266)
chr5 (62-167)||(9737986-9738094)
chr5 (58-167)||(29790220-29790328)
chr5 (46-162)||(10052489-10052606)
chr5 (70-188)||(11856290-11856410)
chr5 (58-167)||(3341121-3341230)
chr5 (64-117)||(33188330-33188383)
[»] chr6 (15 HSPs)
chr6 (33-189)||(24694627-24694783)
chr6 (35-188)||(9231832-9231985)
chr6 (37-190)||(13627535-13627688)
chr6 (53-189)||(14309794-14309930)
chr6 (37-159)||(1727913-1728035)
chr6 (72-189)||(27863694-27863812)
chr6 (46-188)||(28750639-28750783)
chr6 (48-183)||(13103109-13103246)
chr6 (70-167)||(34103703-34103800)
chr6 (136-189)||(11084606-11084659)
chr6 (91-188)||(11279536-11279634)
chr6 (48-119)||(24497565-24497636)
chr6 (45-111)||(11084664-11084730)
chr6 (91-167)||(11212689-11212765)
chr6 (124-185)||(24500767-24500830)
[»] chr3 (27 HSPs)
chr3 (33-189)||(5391453-5391609)
chr3 (22-189)||(32352843-32353010)
chr3 (35-188)||(13856096-13856249)
chr3 (35-188)||(21853194-21853347)
chr3 (35-189)||(40845895-40846049)
chr3 (35-189)||(8950482-8950636)
chr3 (46-189)||(44994957-44995101)
chr3 (70-191)||(23467507-23467628)
chr3 (34-188)||(43347313-43347468)
chr3 (35-188)||(20382514-20382668)
chr3 (58-179)||(22845363-22845484)
chr3 (41-188)||(3178699-3178847)
chr3 (44-188)||(19649359-19649506)
chr3 (62-184)||(54546904-54547027)
chr3 (45-189)||(10839368-10839514)
chr3 (58-188)||(1781757-1781889)
chr3 (62-189)||(33103738-33103866)
chr3 (62-187)||(8926762-8926889)
chr3 (35-188)||(36539627-36539782)
chr3 (58-165)||(46685785-46685891)
chr3 (70-189)||(48206848-48206968)
chr3 (59-189)||(6280361-6280492)
chr3 (62-163)||(51336231-51336332)
chr3 (85-178)||(47889731-47889826)
chr3 (47-107)||(27642738-27642798)
chr3 (62-141)||(50663178-50663257)
chr3 (124-188)||(36826021-36826087)
[»] chr1 (24 HSPs)
chr1 (35-189)||(3346782-3346936)
chr1 (35-185)||(5974988-5975138)
chr1 (35-189)||(10155994-10156148)
chr1 (35-189)||(49902464-49902618)
chr1 (35-189)||(42517272-42517430)
chr1 (35-189)||(7742757-7742911)
chr1 (35-189)||(48392384-48392538)
chr1 (35-189)||(47022698-47022852)
chr1 (70-188)||(23908282-23908400)
chr1 (70-189)||(29149561-29149680)
chr1 (35-185)||(38859849-38860001)
chr1 (45-188)||(10907636-10907781)
chr1 (62-189)||(26835332-26835461)
chr1 (58-188)||(42456566-42456699)
chr1 (58-167)||(30745361-30745471)
chr1 (58-167)||(30766812-30766922)
chr1 (92-160)||(5558334-5558402)
chr1 (73-189)||(44107404-44107522)
chr1 (45-163)||(26511622-26511739)
chr1 (70-167)||(13131914-13132011)
chr1 (99-167)||(30252787-30252856)
chr1 (121-166)||(8430505-8430551)
chr1 (63-128)||(37189697-37189762)
chr1 (58-167)||(45968685-45968794)
[»] scaffold0079 (2 HSPs)
scaffold0079 (51-162)||(54542-54653)
scaffold0079 (124-188)||(54485-54549)
[»] scaffold0045 (1 HSPs)
scaffold0045 (62-167)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (62-141)||(20836-20915)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 21525508 - 21525354
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  21525508 gggcactcgccagggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 21525409  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21525408 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 22324746 - 22324593
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  22324746 gggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 22324647  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324646 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 35806944 - 35806790
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  35806944 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 35806845  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35806844 attttttattatttgcttgcaatttcttatgtacaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 33934347 - 33934502
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| ||||||||| || |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||| ||||     
T  33934347 gggcactcgcccgggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttat 33934446  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33934447 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 33934502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 26021546 - 26021391
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| | |||||||||| | |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||    
T  26021546 gggcactagcccgggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttac 26021447  T
Q  135 att-ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26021446 atttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 42072578 - 42072424
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  42072578 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 42072479  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||  |  |||||||||||||||||    
T  42072478 attttttattatttgcttgcaatttcttatgtaaacaatataaatgtgttgcaaa 42072424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 42014022 - 42013872
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| ||||||| | |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||| |  ||||||||||     
T  42014022 gggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttat 42013923  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42013922 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 19334910 - 19334778
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt-ttttattatttgcttgcaa 156  Q
    |||||||||| ||||||||| | ||||||| ||||||||| ||||||||||| || |||||| || |||||||||| ||| ||||||||||||||| |||    
T  19334910 caaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttgcttacaa 19334811  T
Q  157 tttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||  |||||||||| |||||||||    
T  19334810 tttcttatgtaacccctataaatatgttgcaaa 19334778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 21488216 - 21488084
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    |||||||||||||||||| |    |||  ||||| |||||||||||||||||||| ||||||||||||| |||||||  |||||| || ||||||||||     
T  21488216 gggcactcgtccgggctctgtcctaaagcttttataatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttag 21488117  T
Q  135 atttttt-attatttgcttgcaatttcttatgta 167  Q
    ||||||| |||||| |||||||||||||||||||    
T  21488116 atttttttattatt-gcttgcaatttcttatgta 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 43282851 - 43282962
Alignment:
Q  57 tcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta-cattttttattatttgcttgca 155  Q
    ||||||||||||||||||||| ||||||||| | ||||||| ||||||||| |||| |||||| | ||||||| |||  | ||||||||||||||||||     
T  43282851 tcaaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgct 43282950  T
Q  156 atttcttatgta 167  Q
    ||||||||||||    
T  43282951 atttcttatgta 43282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 24065424 - 24065291
Alignment:
Q  34 tgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta 133  Q
    |||||| | |||| ||||| ||| ||||  |||| ||||||||  | |||||  ||||||||||||||||||||| ||| |||||| |  ||||||||||    
T  24065424 tgggcagttgtccaggctctgggccaaaacttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttcttta 24065325  T
Q  134 cattttttattatttgcttgcaatttcttatgta 167  Q
      ||||||||||||||||||||||||||||||||    
T  24065324 gcttttttattatttgcttgcaatttcttatgta 24065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 10112187 - 10112042
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 143  Q
    |||||||| || |||| |||||| |||||| || ||||||||||| | |||||||||||||||| | | |||||| || |||||||||  ||||||| ||    
T  10112187 ccgggctctggctcaatttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgat 10112088  T
Q  144 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    |||||  |||||||||||||||| |  |||||||||| ||||||||    
T  10112087 tatttatttgcaatttcttatgtaaacccctataaatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 16523245 - 16523172
Alignment:
Q  46 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatt 119  Q
    ||||||||||  |||||||||||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||    
T  16523245 cgggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaatt 16523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 16818974 - 16819105
Alignment:
Q  58 caaattttttacaatttcttgtgtaaat-tcctatgaatttcttatataaacccctctaaatttgataatttcttta---cattttttattatttgcttg 153  Q
    |||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||| |||||| | |||||||| ||     | ||||||||||||||||    
T  16818974 caaattttttgcaatttcttttgtaaatctcct-tgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttg 16819072  T
Q  154 caatttcttatgt-acgccctataaatgtgttg 185  Q
    |||||| |||| | |  ||||||||||||||||    
T  16819073 caattttttatataaacccctataaatgtgttg 16819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 2271318 - 2271196
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 161  Q
    |||||| ||||||||| |||||||     |||||||||||||||||||||| || ||| | ||||||||||| ||||||||       ||| ||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagatttttta-------cttacaatttct 2271226  T
Q  162 tatgt--acgccctataaatgtgttgcaaa 189  Q
    |||||  || ||||||||||||||||||||    
T  2271225 tatgtaaaccccctataaatgtgttgcaaa 2271196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 16591377 - 16591425
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaa 107  Q
    ||||||||| ||||||||| |||||||| ||| ||||||||||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaa 16591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 34697469 - 34697500
Alignment:
Q  136 ttttttattatttgcttgcaatttcttatgta 167  Q
    ||||||||||||||||||||||||||||||||    
T  34697469 ttttttattatttgcttgcaatttcttatgta 34697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 9e-65; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 29846592 - 29846439
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  29846592 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 29846493  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846492 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 42769736 - 42769890
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  42769736 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 42769835  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42769836 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 14942025 - 14942176
Alignment:
Q  38 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 137  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||    
T  14942025 cactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacatt 14942124  T
Q  138 ttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14942125 ttttattatttgcttgcaatttcttatgtacgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 14186417 - 14186570
Alignment:
Q  36 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 135  Q
    |||||||| ||| |||||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||    
T  14186417 ggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttaca 14186516  T
Q  136 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14186517 ctttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 19181675 - 19181544
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 157  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||    
T  19181675 caaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaat 19181576  T
Q  158 ttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||| |||||||||||||||||||||    
T  19181575 ttcttatgtatgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 40277266 - 40277420
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| |||||||||||||| |||||||||| |||||| || ||||||| ||||| ||||||||||||||| |||| |||||| |  |||||||||||    
T  40277266 gggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaatttctttac 40277365  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277366 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 38491723 - 38491823
Alignment:
Q  262 aaatgtatgaagtgtgaacaaaaagggttgggggatctatcgagtttttgactttgaacagtagcatatccatgttgatactggcacgtatgactttgat 361  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  38491723 aaatgtatgaagtgtgaacaaaaagggttggg--atttatcgagtttttgactttgaaccgtagcatatccatgttgatactggcacgtatgactttaat 38491820  T
Q  362 aat 364  Q
    |||    
T  38491821 aat 38491823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 1387312 - 1387421
Alignment:
Q  81 taaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgccc-tataaat 179  Q
    ||||| ||||||||||||||| |||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||  ||| || ||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaat 1387411  T
Q  180 gtgttgcaaa 189  Q
    ||||||||||    
T  1387412 gtgttgcaaa 1387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 3956722 - 3956567
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-a 133  Q
    ||||||||| |||||||||||  ||||   ||| |||||| || ||||||| ||||||||||| |||||||||||||| |||||| || ||||||||| |    
T  3956722 gggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaa 3956623  T
Q  134 cattttttattatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 188  Q
     ||||||||||||||||||||||||||  |||||  || |||||||||||||||||    
T  3956622 aattttttattatttgcttgcaatttcaaatgtaaacctctataaatgtgttgcaa 3956567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 6318463 - 6318592
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 159  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||| |  ||||||||||||||||||||||||    
T  6318463 tttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagattttttttattatttgcttgcaattt 6318562  T
Q  160 cttatgtacg-ccctataaatgtgttgcaa 188  Q
    |  ||||| | |||||||||||||||||||    
T  6318563 caaatgtaagcccctataaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 40780171 - 40780050
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaac-ccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgta 167  Q
    |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  40780171 aatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaatttcttatgta 40780072  T
Q  168 cgcc-ctataaatgtgttgcaa 188  Q
      || |||||||| ||||||||    
T  40780071 aaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 3597903 - 3597999
Alignment:
Q  93 aatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||| | |||| |||| |||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgtattgcaaa 3597999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 33009799 - 33009665
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttt--ttattatttgcttgcaa 156  Q
    ||||||||||||||||||| | ||||| ||||||||||| ||||||||| || | |||||| || |||||||||| |||||  |||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  157 tttcttatgtacgccc-tataaatgtgttgcaaaa 190  Q
    ||| |||||||  ||| |||||| |||||||||||    
T  33009699 ttttttatgtaaacccatataaacgtgttgcaaaa 33009665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 14539705 - 14539838
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaa 156  Q
    |||||||||| ||||||||| ||||| ||||| |||||||||||||||||  ||| |||||| |  |||||||||| | ||||||||||||| |||||||    
T  14539705 caaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgcaa 14539804  T
Q  157 tttcttatgtacgc-cctataaatgtgttgcaaa 189  Q
    |||||||| ||  | |||||||||||||||||||    
T  14539805 tttcttatataaacacctataaatgtgttgcaaa 14539838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 43139870 - 43139766
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 159  Q
    |||||| ||||||||| ||||| ||||| | |||||||||||||||||||| ||||||    |||||||||| |  ||||||||||||||||||||||||    
T  43139870 ttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatttgcttgcaattt 43139771  T
Q  160 cttat 164  Q
    |||||    
T  43139770 cttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 41674718 - 41674841
Alignment:
Q  69 caatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt--attatttgcttgcaatttcttatgt 166  Q
    ||||||||| |||||||  || ||||||| |||||||||||| | |||||| || |||||||||| |||||||  | ||||||||||||||||||||| |    
T  41674718 caatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttatat 41674817  T
Q  167 -acgccctataaatgtgttgcaaa 189  Q
     |  ||||||||||||||||||||    
T  41674818 aaatccctataaatgtgttgcaaa 41674841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  93 aatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 188  Q
    ||||||||||||||| || | ||||||||| ||||| |||| || |||| ||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 3597869 - 3597929
Alignment:
Q  36 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatt 96  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| ||||    
T  3597869 ggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctataaatt 3597929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 28321708 - 28321836
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 160  Q
    |||||| ||||||||| |||||||||   ||||| |||||||||||||| | |||||| |  |||||| ||  ||||||| ||||||||||| |||||||    
T  28321708 ttttttgcaatttcttatgtaaattctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttccaatttc 28321807  T
Q  161 ttatgt-acgccctataaatgtgttgcaa 188  Q
    |||| | |  |||||||||||||||||||    
T  28321808 ttatataaacccctataaatgtgttgcaa 28321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 38491846 - 38491897
Alignment:
Q  396 agtcacatcttcaccatttatttatagtctgaaattgacattcaccggtaccc 448  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  38491846 agtcacatcatcacc-tttatttatagtctgaaattgacattcaccggtaccc 38491897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  93 aatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttat 164  Q
    ||||||||||||||||   | |||||| | |||||||||||  |||||| |||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 32486323 - 32486239
Alignment:
Q  106 aacccctctaaatttgataatttctttacatttttta-ttatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    ||||||| |||||| | |||||| || | |||||||| |||||||||||||||||||||| ||  | | ||||||||||||||||    
T  32486323 aacccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaa 32486239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 29555915 - 29556071
Alignment:
Q  33 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 132  Q
    ||||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||    
T  29555915 ctgggcactcgcccggcctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttcttt 29556014  T
Q  133 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29556015 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 44164721 - 44164875
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  44164721 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttac 44164820  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164821 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 34707266 - 34707113
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  34707266 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34707167  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707166 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 24320427 - 24320572
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 144  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |  |||||||||||||||||||||    
T  24320427 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 24320526  T
Q  145 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24320527 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 24320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 10576823 - 10576669
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||  |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  10576823 gggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 10576724  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10576723 attttttattatttgcttgcaatttcttatgtacgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 29238121 - 29238275
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||  ||||| || |||||||||||    
T  29238121 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttac 29238220  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  29238221 attttttattatttgcttacaatttcttatgtaggccctataaatgtgttgcaaa 29238275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 32876523 - 32876662
Alignment:
Q  50 ctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttg 149  Q
    ||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttg 32876622  T
Q  150 cttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32876623 cttgcaatttcttatgtacgctctataaatgtgttgcaaa 32876662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 34259668 - 34259526
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  34259668 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 34259569  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataa 177  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34259568 attttttattatttgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 29981091 - 29981226
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||     
T  29981091 gggcactcgcccgggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttat 29981190  T
Q  135 attttttattatttgcttgcaatttcttatgtacgc 170  Q
    ||||||||||||||||||||||||||||||||||||    
T  29981191 attttttattatttgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 33057645 - 33057789
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttat 143  Q
    |||||||||||  ||| |||||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||  | |||||||||| | ||||||||    
T  33057645 ccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttat 33057744  T
Q  144 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||   ||||||||||||||||||    
T  33057745 tatttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 19334565 - 19334693
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--ttttttattatttgcttgcaattt 159  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| || |||||||||| |  ||||||||||||||||||||||||    
T  19334565 ttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgcaattt 19334664  T
Q  160 cttatgtacgccctataaatgtgttgcaa 188  Q
    ||||| ||  |||||||||| ||||||||    
T  19334665 cttatataaaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 17303102 - 17303248
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca--tttttta 142  Q
    ||||||||||   ||| |||||| ||||||||| |||||||||||||||||||||||||||||||| | |||||| |  |||||||||| |  |||||||    
T  17303102 ccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagatttttttta 17303201  T
Q  143 ttatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 188  Q
    |||||||||||||||||||||||||  || |||||||||||||||||    
T  17303202 ttatttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 10334318 - 10334173
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat-tttttat 143  Q
    |||||||| ||  ||| |||||| ||||||||| ||||||||||| |||||||||||||||||| | | |||||| |  |||||||||| || ||||||     
T  10334318 ccgggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaa 10334219  T
Q  144 tatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||    
T  10334218 tatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 26284383 - 26284510
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcc-tatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttc 160  Q
    |||||| ||||||||| |||||| ||| | ||||||||||||| ||||   | |||||| || |||||||||| |||||||||||||| |||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttttattattttcttgcaatttc 26284481  T
Q  161 ttatgt-acgccctataaatgtgttgcaa 188  Q
    || ||| |  |||||||||||||||||||    
T  26284482 ttttgtaaacccctataaatgtgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 15017896 - 15017817
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 141  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||| | | |||||| || |||||||||| |||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 9770782 - 9770682
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 161  Q
    |||||| ||||||||| |||||||     ||||||||||||||||||| || | |||| || |||||||||| | |||| ||||||||||||||||||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttct 9770683  T
Q  162 t 162  Q
    |    
T  9770682 t 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 43342533 - 43342485
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaaccc 110  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  43342533 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaaccc 43342485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 41853260 - 41853205
Alignment:
Q  36 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctat 91  Q
    |||||||| |||||||||||  |||||||||| ||||||||| | |||||||||||    
T  41853260 ggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaattcctat 41853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 49284507 - 49284353
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  49284507 gggcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 49284408  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49284407 attttttattatttgtttgcaatttcttatgtacgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 1535921 - 1535767
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  1535921 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 1535822  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1535821 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 25954890 - 25954746
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 144  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |  |||||||||||||||||||||    
T  25954890 ccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttatt 25954791  T
Q  145 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25954790 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 35019087 - 35018932
Alignment:
Q  33 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 132  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| | ||||||||||    
T  35019087 ctgggcactcgcccgggctctgggccaaattttttacaatttcttgtgtaaat-cctatgaatttcttatataaacccttataaattaggtaatttcttt 35018989  T
Q  133 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  35018988 acattttttattatttgcttgcaatttcttatgtacaccttataaatgtgttgcaaa 35018932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 34241133 - 34240988
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 144  Q
    |||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||| |  |||||||||||||||||||||    
T  34241133 ccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttatt 34241034  T
Q  145 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34241033 atttgcttgcaatttcttatgtacgccctataaatgtgttgtaaaa 34240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 37801243 - 37801396
Alignment:
Q  36 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 135  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||||| |||||||||| ||||||||| |||| |||||| |  || |||||||||    
T  37801243 ggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttaca 37801342  T
Q  136 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37801343 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 36012162 - 36012317
Alignment:
Q  33 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 132  Q
    ||||||||||||| ||||| |||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||    
T  36012162 ctgggcactcgtc-gggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttcttt 36012260  T
Q  133 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||| ||||||| | | |||||||||||||||||    
T  36012261 acattttttattatttgcttgcaattttttatgtatgtcatataaatgtgttgcaaa 36012317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 52632633 - 52632514
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 169  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||| |  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacg 52632534  T
Q  170 ccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||    
T  52632533 ccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 17888528 - 17888683
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||| |  ||||||||||     
T  17888528 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttag 17888627  T
Q  135 a-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    | ||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  17888628 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 46583554 - 46583669
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 169  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 46583653  T
Q  170 ccctataaatgtgttg 185  Q
    || |||||||||||||    
T  46583654 ccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 16338207 - 16338318
Alignment:
Q  51 tccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgc 150  Q
    |||||| ||| |||||| |||||| |||||||||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||||||||||    
T  16338207 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 16338306  T
Q  151 ttgcaatttctt 162  Q
    ||||||||||||    
T  16338307 ttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 31377539 - 31377385
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| ||||||| |||||||||||||||||||| || || |||||| |  ||||||||||     
T  31377539 gggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttag 31377441  T
Q  135 atttttt-attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 188  Q
    ||||||| | ||||||||||||||||||||||||  || |||||||||||||||||    
T  31377440 attttttaactatttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 16338311 - 16338375
Alignment:
Q  124 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338311 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 46474130 - 46473987
Alignment:
Q  49 gctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttt-tattatt 147  Q
    |||||||  |||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| | ||||||  | |||||||||| |||||| |||||||    
T  46474130 gctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatt 46474031  T
Q  148 tgcttgcaatttcttatgt-acgccctataaatgtgttgcaaaa 190  Q
    |||||| |||||||||||| |  || ||||||||||||||||||    
T  46474030 tgcttgtaatttcttatgtaaatccttataaatgtgttgcaaaa 46473987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 50328936 - 50328790
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttat 143  Q
    |||||||| || |||| |||||| ||||||||| ||||||||||| | ||||||||||||||||| || |||||| || |||||||||| | ||||||||    
T  50328936 ccgggctctggctcaatttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttat 50328837  T
Q  144 tatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaaa 189  Q
    ||||  |||||||||| |||||||  ||| |||||||||||||||||    
T  50328836 tattcacttgcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 20818717 - 20818584
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||| |   |||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||| |||||| |  ||||| ||||     
T  20818717 gggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttag 20818618  T
Q  135 atttttt-attatttgcttgcaatttcttatgta 167  Q
    ||||||| |||||||| |||||||||||||||||    
T  20818617 attttttgattatttgtttgcaatttcttatgta 20818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 9742538 - 9742661
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 160  Q
    |||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| |  |||||||||| ||||||| ||||||| | |||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttc 9742637  T
Q  161 ttatgtacgc-cctataaatgtgt 183  Q
    |||||||  | |||||||||||||    
T  9742638 ttatgtaaacacctataaatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 322584 - 322682
Alignment:
Q  92 gaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||| |||||| || |||||||||| ||||||| ||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 10094394 - 10094495
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 156  Q
    ||||||||||  |||||||| |||||||| || |||||||||||||||||||||| |||||| | |||||| |||| ||||||| |||||||||||||||    
T  10094394 caaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttgcttgcaa 10094493  T
Q  157 tt 158  Q
    ||    
T  10094494 tt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 36851365 - 36851442
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccct 112  Q
    ||||||||| | |||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  36851365 gggcactcgcctgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccct 36851442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 54090308 - 54090176
Alignment:
Q  57 tcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaa 156  Q
    ||||||||||| ||||| ||| ||||||| ||| ||||||| |||||||||| | | |||||| |  ||||| |||| ||||||||||||||||||||||    
T  54090308 tcaaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaa 54090209  T
Q  157 -tttcttatgtacgccctataaatgtgttgcaa 188  Q
     ||| |||||||  ||||||| |||||||||||    
T  54090208 tttttttatgtaaaccctatagatgtgttgcaa 54090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 11054595 - 11054448
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta-catttttt-- 141  Q
    ||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||| |  ||| ||||||  |||||||      
T  11054595 ccgggctccgg-tccaattttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtatttttttt 11054497  T
Q  142 -attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 188  Q
      |||||||||||||||||||||||||  ||  ||||||||||||||||    
T  11054496 atttatttgcttgcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 47084138 - 47084056
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 141  Q
    ||||||||| ||||||||| |||||||| || |||||||||||||||||||||| |||||| | ||||||||||| |||||||    
T  47084138 aaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 12792209 - 12792365
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    |||||| ||||||||||  ||  ||| ||||||  |||||||| |||||||| || |||||||||||||||||||||| |||||| |  |||| |||||     
T  12792209 gggcacgcgtccgggctttggcccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttag 12792308  T
Q  135 attttt-tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 189  Q
    ||||||  |||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  12792309 atttttagattatttgcttgaaatttcttatataaacatctataaatgtgttgcaaa 12792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 19124743 - 19124849
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgat-aatttctttaca-ttttttattatttgcttgcaattt 159  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||  || |||| ||||| |||||||||| | ||||||||||||| ||| ||||||    
T  19124743 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaa-ttgatcaatttctttaaatttttttattatttacttacaattt 19124841  T
Q  160 cttatgta 167  Q
    ||||||||    
T  19124842 cttatgta 19124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 33982130 - 33981997
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt-ttttatta--tttgcttgca 155  Q
    |||||||||| |||||||| ||||||| ||| | |||||||||||||||| | | |||||| ||||||||||||| ||| | ||| ||  ||||||||||    
T  33982130 aaattttttaaaatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttctttagattgtattaatatttttgcttgca 33982031  T
Q  156 atttcttatgtacgccc-tataaatgtgttgcaa 188  Q
    |||| |||||||  ||| | ||||||||||||||    
T  33982030 attttttatgtaaacccatgtaaatgtgttgcaa 33981997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 188
Target Start/End: Original strand, 35322728 - 35322837
Alignment:
Q  81 taaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgt-acgccctataaa 178  Q
    |||||| || ||||| ||||||||||||| || ||||||  | |||||||||| ||||||| ||||||||||||||||||||||| | |  |||||||||    
T  35322728 taaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgcaatttcttatataaacccctataaa 35322827  T
Q  179 tgtgttgcaa 188  Q
     |||||||||    
T  35322828 agtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 46583529 - 46583561
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaatttttt 67  Q
    ||||||||| |||||||||||||||||||||||    
T  46583529 gggcactcgcccgggctccgggtcaaatttttt 46583561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 16618548 - 16618701
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| || ||||| ||||     
T  16618548 gggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttat 16618647  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16618648 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 38397748 - 38397595
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  38397748 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 38397649  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38397648 attttttattatttgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 6257388 - 6257543
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||| |  |||||||||||    
T  6257388 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttac 6257487  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 190  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6257488 attttttattatttgcttgcaatttcttatatacgccctataaatgtgttgcaaaa 6257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 23218635 - 23218481
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| ||||| |||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  23218635 gggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 23218536  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23218535 attttttattatttgcttgcaatttcttatgtactccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 37169011 - 37169165
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| | |||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  37169011 gggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 37169110  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37169111 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 15631764 - 15631613
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccc-tctaaatttgataatttcttta 133  Q
    ||||||||| ||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||||| || ||||||||||    
T  15631764 gggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttcttta 15631665  T
Q  134 cattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15631664 cattttttattatttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 39862465 - 39862619
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| ||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||     
T  39862465 gggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttag 39862564  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  39862565 attttttattatttgcttgcaatttcttatatacgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 8456943 - 8457096
Alignment:
Q  37 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca- 135  Q
    ||||||| |||||||||||  |||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||| |  |||||||||| |     
T  8456943 gcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagat 8457042  T
Q  136 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  8457043 ttttttattatttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 36769053 - 36769207
Alignment:
Q  36 ggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca 135  Q
    |||||| |||||| ||||||  |||||||||| ||||||||| ||||||||||| ||||||||||||||||||| || | |||| |  |||||||||| |    
T  36769053 ggcacttgtccggactccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttaga 36769152  T
Q  136 ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaaa 189  Q
    ||||| ||||||||||||||||||| ||||| |  ||||||||||||||||||||    
T  36769153 tttttgattatttgcttgcaatttcatatgtaaacccctataaatgtgttgcaaa 36769207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 25560309 - 25560460
Alignment:
Q  38 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 137  Q
    |||||||||||||||||| |||| |||||| ||||||||| ||||||| | ||| ||||||||||||||||  || |||||| || |||||||||| |||    
T  25560309 cactcgtccgggctccggctcaattttttt-caatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagatt 25560407  T
Q  138 -ttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 188  Q
     ||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  25560408 attttattatttgcttgcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 614390 - 614522
Alignment:
Q  55 ggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttg 153  Q
    |||||| |||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| ||||||||  |||||||||| | ||||||||||||||||||    
T  614390 ggtcaatttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttg 614489  T
Q  154 caatttcttatgtacgc-cctataaatgtgttg 185  Q
    ||||||||||||||  | |||||||||||||||    
T  614490 caatttcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 10081268 - 10081140
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaatttc 160  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| |  |||||||||| | ||||||||||||||||| |||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttc 10081169  T
Q  161 ttatgtacgc-cctataaatgtgttgcaa 188  Q
    |||||||  | ||||||||||||||||||    
T  10081168 ttatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 33271258 - 33271377
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 144  Q
    |||| ||||||  ||| |||||||||||||||| ||||||||||  ||||||||||||||||||| || |||||| || |||||||||| ||||||||||    
T  33271258 ccggactccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttatt 33271357  T
Q  145 atttgcttgcaatttcttat 164  Q
    ||||| ||| ||||||||||    
T  33271358 atttgtttgtaatttcttat 33271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 42119747 - 42119617
Alignment:
Q  60 aattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaatt 158  Q
    ||||||||  |||||||| ||||||||||| ||||||||||||||||||| || |||||| || |||||||||| | |||||||||||||| ||| ||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatt 42119648  T
Q  159 tcttatgt-acgccctataaatgtgttgcaa 188  Q
    |||||||| |  |||||||||||||||||||    
T  42119647 tcttatgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 6174873 - 6174762
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctcta--aatttgataatttctttacattttttattatttgcttgca 155  Q
    ||||||||||  ||||||||  |||||||| | ||||||||||||||||||||| |||  |||| || |||||||||| |||||||||||||||||||||    
T  6174873 caaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgca 6174774  T
Q  156 atttcttatgta 167  Q
    ||||| ||||||    
T  6174773 atttcctatgta 6174762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 29491395 - 29491521
Alignment:
Q  38 cactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatt 137  Q
    |||||||||||||| | |  ||||| |||| ||||||||| |||||||| ||||||||||||||||| ||||||| |||||| || || ||||||| |||    
T  29491395 cactcgtccgggcttcagcccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaa-ttctttaaatt 29491492  T
Q  138 tttt-attatttgcttgcaatttcttatg 165  Q
    |||| ||||||||||||||||||||||||    
T  29491493 ttttgattatttgcttgcaatttcttatg 29491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 10115300 - 10115185
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 143  Q
    |||||||||||  ||| |||||| |||||| || ||||||||||| || ||||||||||||||||||  |||||| || |||||||||| ||||||| ||    
T  10115300 ccgggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaat 10115201  T
Q  144 tatttgcttgcaattt 159  Q
    ||||||||||||||||    
T  10115200 tatttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 27916266 - 27916133
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttgcaat 157  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||| ||||||    |||||| ||| | |||||||||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  158 ttcttatgt--acgccctataaatgtgttgcaaa 189  Q
    ||||||| |  ||  |||||||||||||||||||    
T  27916166 ttcttatataaacctcctataaatgtgttgcaaa 27916133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 9737986 - 9738094
Alignment:
Q  62 ttttttacaatttcttgtgtaaa--ttcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatt 158  Q
    |||||| ||||||||| ||||||  | ||||||||||||||||||||| |||| |||||| || |||||||||| |||||||  ||||||||||||||||    
T  9737986 tttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttgcaatt 9738085  T
Q  159 tcttatgta 167  Q
    |||||||||    
T  9738086 tcttatgta 9738094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 29790220 - 29790328
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 157  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||||||||  | |||||| |  ||||||||||  ||||| |||||||||||  |||    
T  29790220 caaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta-gtttttgattatttgcttttaat 29790318  T
Q  158 ttcttatgta 167  Q
    ||||||||||    
T  29790319 ttcttatgta 29790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 10052489 - 10052606
Alignment:
Q  46 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-acattttttatt 144  Q
    ||||||||||  ||| |||||||||||||||| ||||||| ||| |||| | |||||||||||  || |||||| | |||||||||| | |||||  |||    
T  10052489 cgggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagatt 10052588  T
Q  145 atttgcttgcaatttctt 162  Q
    ||||||||||||||||||    
T  10052589 atttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 11856410 - 11856290
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtac 168  Q
    |||||||| |||||||  || ||||||||||||||||| | || |||||| |  |||||||||| ||||||| ||||||| ||||||||||||||||||     
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattatttacttgcaatttcttatgtaa 11856311  T
Q  169 gc-cctataaatgtgttgcaa 188  Q
     | ||||||||| ||||||||    
T  11856310 actcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 3341121 - 3341230
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttctt-atataaacccctctaaatttgataatttctttacattttttattatttgcttgcaa 156  Q
    |||||||||| ||||||||| ||||||||| | ||||||| || |||||| ||||| |||||| |  ||||||||||  ||||| ||||||||||| |||    
T  3341121 caaattttttgcaatttcttatgtaaattc-tctgaatttttttatataatcccctataaattgggaaatttctttagctttttgattatttgctttcaa 3341219  T
Q  157 tttcttatgta 167  Q
    ||| |||||||    
T  3341220 ttttttatgta 3341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 33188330 - 33188383
Alignment:
Q  64 ttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaa 117  Q
    |||| ||||||||| ||||||||| | | |||||||||||||||||||| ||||    
T  33188330 ttttgcaatttcttatgtaaattcatctaaatttcttatataaacccctataaa 33188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 24694627 - 24694783
Alignment:
Q  33 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 132  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||| |  |||||||||    
T  24694627 ctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttcttt 24694726  T
Q  133 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24694727 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 9231832 - 9231985
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| |||||| |||||||||||||||||  ||||||||||||||||||||||||| |||||| |  |||||||||||    
T  9231832 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttac 9231931  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9231932 attttttattatttgcttgcaatttcttatgtatgccctataaatgtgttgcaa 9231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 13627688 - 13627535
Alignment:
Q  37 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat 136  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||    |||||||||||||    
T  13627688 gcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 13627589  T
Q  137 tttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaaa 190  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  13627588 tttttattatttgcttgtactttcttatgtacgtcctataaatatgttgcaaaa 13627535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 14309794 - 14309930
Alignment:
Q  53 cgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgctt 152  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||||||    
T  14309794 cgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 14309893  T
Q  153 gcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||    
T  14309894 gcaatttcttatgtacgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 1727913 - 1728035
Alignment:
Q  37 gcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacat 136  Q
    ||||||| || ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||    |||||||||||||    
T  1727913 gcactcgcccaggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacat 1728012  T
Q  137 tttttattatttgcttgcaattt 159  Q
    |||||||||||| ||||||||||    
T  1728013 tttttattatttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 27863812 - 27863694
Alignment:
Q  72 tttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacgc- 170  Q
    |||||| |||||||| || |||||||||||||||||||| | |||||| || |||||||||| ||||||||||||||| |||||||||||||||||  |     
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgcaatttcttatgtaaaca 27863713  T
Q  171 cctataaatgtgttgcaaa 189  Q
     ||||||||||||||||||    
T  27863712 tctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 28750639 - 28750783
Alignment:
Q  46 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-att 144  Q
    ||||||| ||| ||| |||||| ||||||||| ||||||||| | |||||||||||||||||||||| |||||| |  ||||||||||  |||||| |||    
T  28750639 cgggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgatt 28750738  T
Q  145 atttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    ||||||||| |||||||||||||  | | ||||||||||||||||    
T  28750739 atttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 13103109 - 13103246
Alignment:
Q  48 ggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attat 146  Q
    ||||| || ||||||||||| |||||| || ||||||||||| |||||||||||||||||||  | |||||| |  |||||||||| ||||||| |||||    
T  13103109 ggctctggctcaaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattat 13103208  T
Q  147 ttgcttgcaatttcttatgtacgc-cctataaatgtgt 183  Q
    ||||||||||||||| |||||  | |||||||||||||    
T  13103209 ttgcttgcaatttctaatgtaaacacctataaatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 34103800 - 34103703
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 167  Q
    ||||| || ||||||||||| |||||||||||||||||||| | |||||| |  |||||||||| ||||||||||||||| |||||||||||||||||    
T  34103800 aatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttcttatgta 34103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 11084659 - 11084606
Alignment:
Q  136 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 11084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 11279634 - 11279536
Alignment:
Q  91 tgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    ||||||| |||||||||  | | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 24497565 - 24497636
Alignment:
Q  48 ggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatt 119  Q
    ||||||||  |||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  24497565 ggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaatt 24497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 11084730 - 11084664
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccc 111  Q
    ||||| |||| | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11084730 ccgggttccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 11212765 - 11212689
Alignment:
Q  91 tgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 167  Q
    ||||||| || |||||| |||| |||||| |  |||||||||| |||||| |||||||||||| |||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgta 11212689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 24500767 - 24500830
Alignment:
Q  124 aatttctttacatttt-ttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttg 185  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttg 24500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 5391609 - 5391453
Alignment:
Q  33 ctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt 132  Q
    ||||||||||| |||||||||| | ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||    
T  5391609 ctgggcactcgcccgggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttcttt 5391510  T
Q  133 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391509 acattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 32353010 - 32352843
Alignment:
Q  22 caggggcggttctgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttg 121  Q
    |||||||||||| ||||||||| |||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |    
T  32353010 caggggcggttccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattag 32352911  T
Q  122 ataatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32352910 gcaatttctttacattttttattatttgcttacaatttcttatgtacgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 13856249 - 13856096
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| | |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| || |||||||||||    
T  13856249 gggcacttgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttac 13856150  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13856149 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 13856096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 21853347 - 21853194
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||||||||    
T  21853347 gggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttac 21853248  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853247 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 40845895 - 40846049
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||| ||| ||||| ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |  |||||||||||    
T  40845895 gggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttac 40845994  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845995 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 8950482 - 8950636
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |  |||||||||||    
T  8950482 gggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttac 8950581  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8950582 attttttattatttgcttgaaatttcttatgtacgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 44994957 - 44995101
Alignment:
Q  46 cgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctc-taaatttgataatttctttacattttttatt 144  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||  |||||| |  |||||||||||||||||||||    
T  44994957 cgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttttatt 44995056  T
Q  145 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44995057 atttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 23467507 - 23467628
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 169  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 23467606  T
Q  170 ccctataaatgtgttgcaaaaa 191  Q
    ||||||||||||||||||||||    
T  23467607 ccctataaatgtgttgcaaaaa 23467628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 43347313 - 43347468
Alignment:
Q  34 tgggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttta 133  Q
    |||||| | ||||||||||||   |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||  ||||| |  ||||||||||    
T  43347313 tgggcagttgtccgggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttcttta 43347412  T
Q  134 catttttt-attatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
     ||||||| ||||||||||||||||||||||||||  |||||||| | ||||||||    
T  43347413 gattttttgattatttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 20382668 - 20382514
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||| | |||||||||||  ||||||||||  |||||||| ||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||     
T  20382668 gggcacttgcccgggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttag 20382570  T
Q  135 a-ttttttattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    | ||||||||||||||||||||||||||||||||  | |||||||||| |||||||    
T  20382569 atttttttattatttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 22845363 - 22845484
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 157  Q
    |||||||||| ||||||||| |||||||||   | |||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  22845363 caaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaat 22845462  T
Q  158 ttcttatgtacgccctataaat 179  Q
    || |||| ||  ||||||||||    
T  22845463 tttttatataaaccctataaat 22845484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 3178847 - 3178699
Alignment:
Q  41 tcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttt 140  Q
    ||||| |||||||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||| | || |||||| |  ||||||||||  |||||    
T  3178847 tcgtctgggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagtttttt 3178748  T
Q  141 tattatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    | |||||||||||||||||| ||||||  | ||||||||| ||||||||    
T  3178747 ttttatttgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 19649359 - 19649506
Alignment:
Q  44 tccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-- 141  Q
    ||||||||||||  ||| ||||||  |||||||| |||||||  ||||||||||||||||||||||| | |||||| || |||||||||| |||||||      
T  19649359 tccgggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttgg 19649458  T
Q  142 attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||    
T  19649459 attatttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 54547027 - 54546904
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 161  Q
    |||||| |||||||||  |||||||||| |||||||||||||||||||||| |||||| || |||||||||| |||||| ||||||||||| ||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttct 54546928  T
Q  162 tatgt-acgccctataaatgtgtt 184  Q
    ||||| |  |||||||||||||||    
T  54546927 tatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 10839368 - 10839514
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 143  Q
    ||||||||||   |||||||||| ||||||||| |||||||| || ||||||||||||||||||| || |||||| |  |||||||||| ||||||| ||    
T  10839368 ccgggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttgat 10839467  T
Q  144 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaaa 189  Q
    ||||||||||||||||||||||||  | |||||| ||||||||||||    
T  10839468 tatttgcttgcaatttcttatgtaaacacctatacatgtgttgcaaa 10839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 1781889 - 1781757
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 156  Q
    |||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||  |||||| |  |||||||||| ||||||| |||||||||||||||    
T  1781889 caaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgattatttgcttgcaa 1781790  T
Q  157 tttcttatgt-acgccctataaatgtgttgcaa 188  Q
    |||| ||||| |  |||||||||||||||||||    
T  1781789 tttcgtatgtaaacccctataaatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 33103866 - 33103738
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 161  Q
    |||||| ||||||||| ||||||||||  | ||||||||||||||  |||| |||||| |||||||| |||| ||||||||||||||||||| |||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttct 33103767  T
Q  162 tatgt-acgccctataaatgtgttgcaaa 189  Q
    ||||| |  || |||||||||||||||||    
T  33103766 tatgtaaatccttataaatgtgttgcaaa 33103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 8926889 - 8926762
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 160  Q
    |||||| ||||||| | ||||||||||| ||||||||| |||||||||||| ||||||||  ||||||| || ||||||| |||||||||||||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttc 8926790  T
Q  161 ttatg-tacgccctataaatgtgttgca 187  Q
    ||||| ||  || |||||||||||||||    
T  8926789 ttatgttaacccttataaatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 36539782 - 36539627
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||| ||| |||||||||||   ||||||| | ||||||||| ||||||| ||||| |||||||||||||| ||||| |||||| |  ||||||||||     
T  36539782 gggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaa 36539683  T
Q  135 atttttt-attatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    ||||||| |||||||| |||||||||| ||||| |  |||||||||||||||||||    
T  36539682 attttttgattatttgtttgcaatttcctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 46685785 - 46685891
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 157  Q
    |||||||||| || |||||| ||||||| ||  | |||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||| |||||||    
T  46685785 caaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtttgcaat 46685883  T
Q  158 ttcttatg 165  Q
    ||||||||    
T  46685884 ttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 48206968 - 48206848
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgtac 168  Q
    ||||| || ||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||| ||||||| ||||||| ||||||||||||||||||     
T  48206968 aattttttatgtaaattcctctgaatt-cttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaa 48206870  T
Q  169 gc-cctataaatgtgttgcaaa 189  Q
     | | |||||||||||||||||    
T  48206869 acacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 6280361 - 6280492
Alignment:
Q  59 aaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatt 158  Q
    ||||||| | ||||||||| |||||||| |  ||||||||||||||||||| || ||||||||| ||||| |||| |||||| || |||||||||| |||    
T  6280361 aaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttgcttgccatt 6280460  T
Q  159 tcttatgtacgcc-ctataaatgtgttgcaaa 189  Q
    | |||||||  ||  |||||||||||||||||    
T  6280461 ttttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 51336332 - 51336231
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttct 161  Q
    |||||| |||||| || |||||||||   ||||||| ||||||||| |  | ||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  51336332 ttttttgcaattttttatgtaaattctcctgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttgcaatttct 51336233  T
Q  162 ta 163  Q
    ||    
T  51336232 ta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 47889826 - 47889731
Alignment:
Q  85 ttcctatgaatttcttatataaacccctctaaatttgataatttctttaca-ttttttattatttgcttg-caatttcttatgtacgccctataaa 178  Q
    |||||||||||||||||||||||  ||| |||||| |  |||||||||| | ||||||||||||| |||| |||||||| |||||  |||||||||    
T  47889826 ttcctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccctataaa 47889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 27642798 - 27642738
Alignment:
Q  47 gggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaa 107  Q
    ||||||| | ||||||||||| ||||||||| ||||||| | | |||||||||||||||||    
T  27642798 gggctcctgctcaaattttttgcaatttcttatgtaaatccttttgaatttcttatataaa 27642738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 50663257 - 50663178
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 141  Q
    |||||| ||||||||| |||| |||||| | |||||||||||||||||| | ||||||  | |||||||||  |||||||    
T  50663257 ttttttgcaatttcttatgtagattcctctaaatttcttatataaacccttataaattgaaaaatttctttgtatttttt 50663178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 36826021 - 36826087
Alignment:
Q  124 aatttctttacattttttatt-atttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 188  Q
    |||||||||| |||||||| | ||||||||||| |||||||||| |  |||||||||||||||||||    
T  36826021 aatttctttaaattttttaatgatttgcttgcagtttcttatgtaaacccctataaatgtgttgcaa 36826087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 3346936 - 3346782
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| ||| ||| |||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  3346936 gggcactcgcccgagcttcgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttac 3346837  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3346836 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 5975138 - 5974988
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||| |  |||||||||||    
T  5975138 gggcactcgcccgggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttac 5975039  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5975038 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 10155994 - 10156148
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||  || |||||| || ||||||||||     
T  10155994 gggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttat 10156093  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10156094 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 49902618 - 49902464
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    |||||||||  ||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||  |  |||||||||||    
T  49902618 gggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttac 49902519  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49902518 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 42517272 - 42517430
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaac----ccctctaaatttgataatttct 130  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||    |||| |||||| |  |||||||    
T  42517272 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttct 42517371  T
Q  131 ttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42517372 ttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 7742757 - 7742911
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||| |  || |||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||| |  |||||||||||    
T  7742757 gggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttac 7742856  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742857 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 48392384 - 48392538
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||| | ||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |  |||||| ||||    
T  48392384 gggcactcgcccgggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattac 48392483  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48392484 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 47022852 - 47022698
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||| ||| |||||| |  ||||||||||     
T  47022852 gggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttat 47022753  T
Q  135 attttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaa 189  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  47022752 attttttattatttacttgtaatttcttatgtacgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 23908400 - 23908282
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 169  Q
    ||||| |||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||  ||||||||||||||||||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacg 23908301  T
Q  170 ccctataaatgtgttgcaa 188  Q
    |||||||||||||||||||    
T  23908300 ccctataaatgtgttgcaa 23908282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 29149561 - 29149680
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgtacg 169  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacg 29149660  T
Q  170 ccctataaatgtgttgcaaa 189  Q
    ||||||| ||||||||||||    
T  29149661 ccctatacatgtgttgcaaa 29149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 38860001 - 38859849
Alignment:
Q  35 gggcactcgtccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttac 134  Q
    ||||||||| |||||||||||  |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||| ||||     
T  38860001 gggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttag 38859902  T
Q  135 a-ttttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttg 185  Q
    | ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  38859901 atttttttattatttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 10907636 - 10907781
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-at 143  Q
    |||||||||||  |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||  || |||||||||| ||||||| ||    
T  10907636 ccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgat 10907735  T
Q  144 tatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 188  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||    
T  10907736 tatttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 26835461 - 26835332
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 160  Q
    |||||| |||||| || ||||||||| |||||||||||||||||||| ||| ||||||  | ||||| |||| ||||||| |||||||||||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttc 26835362  T
Q  161 ttatgtacgccc-tataaatgtgttgcaaa 189  Q
    | |||||  ||| |||||||||||||||||    
T  26835361 tcatgtaaacccatataaatgtgttgcaaa 26835332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 42456699 - 42456566
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttcttt-acattttttattatttgcttgcaa 156  Q
    |||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||| |  ||||||||| | |   |||||||| | |||||||    
T  42456699 caaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgcaa 42456600  T
Q  157 tttcttatgt--acgccctataaatgtgttgcaa 188  Q
    ||||||||||  |  |||||||||||||||||||    
T  42456599 tttcttatgtaaatcccctataaatgtgttgcaa 42456566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 30745471 - 30745361
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 156  Q
    ||||| |||| |||||| || |||||||| || |||||||||| |||||| |||| |||||| || |||||||||| ||||||| ||||||| |||||||    
T  30745471 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30745372  T
Q  157 tttcttatgta 167  Q
    |||||||||||    
T  30745371 tttcttatgta 30745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 30766922 - 30766812
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaa 156  Q
    ||||| |||| |||||| || |||||||| || |||||||||| |||||| |||| |||||| || |||||||||| ||||||| ||||||| |||||||    
T  30766922 caaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgattatttacttgcaa 30766823  T
Q  157 tttcttatgta 167  Q
    |||||||||||    
T  30766822 tttcttatgta 30766812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 5558402 - 5558334
Alignment:
Q  92 gaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttc 160  Q
    ||||||||||||||||||||| |||||| || |||||||||| |||||| |||||||||||||||||||    
T  5558402 gaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 44107404 - 44107522
Alignment:
Q  73 ttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgt-acgc 170  Q
    ||||| ||||||||||| ||| ||| |||||||||||||| ||||||   ||||||||| | ||||||| ||||||| ||||||||||||||||| |  |    
T  44107404 ttcttatgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattatttacttgcaatttcttatgtaaaac 44107503  T
Q  171 cctataaatgtgttgcaaa 189  Q
    | |||||||||||||||||    
T  44107504 cttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 26511622 - 26511739
Alignment:
Q  45 ccgggctccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttatt 144  Q
    |||||||||||   || |||||| ||||||||| ||||||  ||  |||||||||||||||||  ||| ||||||  |||||||||||| |||||| |||    
T  26511622 ccgggctccggcctaatttttttgcaatttcttatgtaaaccccc-tgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgatt 26511720  T
Q  145 atttgcttgcaatttctta 163  Q
    |||| ||| ||||||||||    
T  26511721 atttacttacaatttctta 26511739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 13132011 - 13131914
Alignment:
Q  70 aatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaatttcttatgta 167  Q
    |||||||| ||||||||||| | ||||| ||||||||| | || |||||| || ||||||||||  |||||  |||| | ||||||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttcttatgta 13131914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 30252787 - 30252856
Alignment:
Q  99 ttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttcttatgta 167  Q
    ||||||||| |||| |||||| || || ||||||| ||||||| ||||||||||||||||||||||||||    
T  30252787 ttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgta 30252856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 8430505 - 8430551
Alignment:
Q  121 gataatttctttacatttt-ttattatttgcttgcaatttcttatgt 166  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  8430505 gataatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 37189762 - 37189697
Alignment:
Q  63 tttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataattt 128  Q
    ||||| ||||||||| |||||||  |||||||||||||||||||| | || |||||| || |||||    
T  37189762 tttttgcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 45968794 - 45968685
Alignment:
Q  58 caaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgcttgcaat 157  Q
    |||||||||| |||| | || ||||| |||   ||||||| |||||||| | | | |||||| || ||||| | || |||||| ||||||| ||||||||    
T  45968794 caaattttttgcaatattttatgtaagttctcctgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaat 45968695  T
Q  158 ttcttatgta 167  Q
    ||||||||||    
T  45968694 ttcttatgta 45968685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 54653 - 54542
Alignment:
Q  51 tccgggtcaaattttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacattttttattatttgc 150  Q
    |||||| ||| |||||| |||||| |||||||||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||||||||||    
T  54653 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 54554  T
Q  151 ttgcaatttctt 162  Q
    ||||||||||||    
T  54553 ttgcaatttctt 54542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 54549 - 54485
Alignment:
Q  124 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54549 aatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 54485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 34457 - 34563
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt-attatttgcttgcaatttc 160  Q
    |||||| ||||||||| ||||||| ||| ||||||  ||||||||| | || |||||| || | |||||||| ||||||| ||||||||||| |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttc 34556  T
Q  161 ttatgta 167  Q
    |||||||    
T  34557 ttatgta 34563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 20836 - 20915
Alignment:
Q  62 ttttttacaatttcttgtgtaaattcctatgaatttcttatataaacccctctaaatttgataatttctttacatttttt 141  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||| | || |||||| || ||||| |||| |||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagatttttt 20915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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