View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_26 (Length: 448)
Name: NF21242_high_26
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 49919787 - 49920221
Alignment:
| Q |
1 |
ccaaacatatctgctgcaagagttccaaatataatctgataattattatttatattgtcaagttttccctgaatcactagatgaggtgccatttaccagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
49919787 |
ccaaacatatctgctgcaagagttccaaatataatctgataattattatttatattgtcaggttttccctgaatcactagatggggtgccatttaccagt |
49919886 |
T |
|
| Q |
101 |
ccagcagtatgttatgttaattcaaatgttacatttgtagctattttcccattcataaattaagtaaattgattttcctgctggttagaattaattgtaa |
200 |
Q |
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| T |
49919887 |
ccagcagtatgttatgttaattcaaatgttacatttgtagctattttcctattcataaattaagtaaattgattttcctgctggttagaattaattgtaa |
49919986 |
T |
|
| Q |
201 |
gatattatggnnnnnnnagtttgatgatattgtggtttcttcgctgcaggtcctatgtgcatcttacactgatgaggaattctttaaatttaaatgttgt |
300 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49919987 |
gatatgatggtttttttagtttgatgatattgtggtttcttcgctgcaggtcctatgtgcatcttacactgatgaggaattctttaaatttaaatgttgt |
49920086 |
T |
|
| Q |
301 |
ggtaatgttccaactaattattattacattagtttgtgtgaaacttgattacataataaaaacttgcatcttcactttcgcaaccaattccttacannnn |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49920087 |
ggtaatgttccaactaattattattacattagtttgtgtgaaacttgattacataataaaaacttgcatcttcactttcgcaaccaattccttacatttt |
49920186 |
T |
|
| Q |
401 |
nnnatacaaattaccatgaaggggattgttggttc |
435 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
49920187 |
tttatacaaattaccatgaaggggattgttggttc |
49920221 |
T |
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