View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_27 (Length: 447)
Name: NF21242_high_27
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 196 - 436
Target Start/End: Original strand, 19095164 - 19095404
Alignment:
| Q |
196 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaactattatctaatctccatagttgaactttttccttgtctttaagcaacgaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaactatcatctaagctccatagttgaaatttttccttgtctttaagcaacgaa |
19095263 |
T |
|
| Q |
296 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggatcatcgacatttga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
19095264 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggaccaccgacatttga |
19095363 |
T |
|
| Q |
396 |
tgcattcttttacttaaagactctgattctccagacttcat |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19095364 |
tgcattcttttacttaaagactctgattctccagacttcat |
19095404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 19094980 - 19095131
Alignment:
| Q |
16 |
atatatgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgt |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19094980 |
atatatcctaagaaatcacttttaatattcttgtcaaaagtataacac--gaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgt |
19095077 |
T |
|
| Q |
116 |
tttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19095078 |
tttcatttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
74 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
110 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University