View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_28 (Length: 444)
Name: NF21242_high_28
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_28 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 33800376 - 33800794
Alignment:
| Q |
19 |
tcattaggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800376 |
tcattaggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatcc |
33800475 |
T |
|
| Q |
119 |
actcgggtgcaaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33800476 |
actcgggtgcaaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggc |
33800575 |
T |
|
| Q |
219 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800576 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
33800675 |
T |
|
| Q |
319 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800676 |
cctaatgctatactaaaccttgtatcccaatccaaaagaaattcactttttttgttcttgaatatccatttatccaatgagttattagccatgtactcgt |
33800775 |
T |
|
| Q |
419 |
aaactagaagcctatgatt |
437 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33800776 |
aaactagaagcctatgatt |
33800794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 435
Target Start/End: Original strand, 33804844 - 33805260
Alignment:
| Q |
23 |
taggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactc |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33804844 |
taggatcataattcttccttcccccaattatctctagcaacaccatcccatagctgtatacatcacttttctctgatatagcatagtttgttatccactc |
33804943 |
T |
|
| Q |
123 |
gggtgcaagg---tagccacgagttcctcttaatgtagtaaaaacatggctttct-tctctattcataagcttggctaaaccaaagtctgaaactttggc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33804944 |
gggtgcaaggaggtagccacgagttcctcttagtgttgtaaaaacatggcttttgctctctattcataagcttggctaaaccaaaatctgaaactttggc |
33805043 |
T |
|
| Q |
219 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33805044 |
aatgaaatgatcatcaagaagtacattttcaggtttcatgtcacaatgaacaatctttgagtcacactcttgatgcagatacgcaagtccttttgctgtt |
33805143 |
T |
|
| Q |
319 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
33805144 |
cctaatgctatactaaaccttgtatcccaatccaaaagaaattcacttattttcttcttgaatatccatttatccaatgagttattagccatataatcat |
33805243 |
T |
|
| Q |
419 |
aaactagaagcctatga |
435 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
33805244 |
aaactagaagtctatga |
33805260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 23 - 435
Target Start/End: Complemental strand, 33813460 - 33813044
Alignment:
| Q |
23 |
taggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactc |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33813460 |
taggatcataattcttccttcccccaattatctctagcaacaccatcccatagctgtatacatcacttttctctgatatagcatagtttgttatccactc |
33813361 |
T |
|
| Q |
123 |
gggtgcaagg---tagccacgagttcctcttaatgtagtaaaaacatggctttct-tctctattcataagcttggctaaaccaaagtctgaaactttggc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33813360 |
gggtgcaaggaggtagccacgagttcctcttagtgttgtaaaaacatggcttttgctctctattcataagcttggctaaaccaaaatctgaaactttggc |
33813261 |
T |
|
| Q |
219 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33813260 |
aatgaaatgatcatcaagaagtacattttcaggtttcatgtcacaatgaacaatctttgagtcacactcttgatgcagatacgcaagtccttttgctgtt |
33813161 |
T |
|
| Q |
319 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgt |
418 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
33813160 |
cctaatgctatactaaaccttgtatcccaatccaaaagaaattcacttattttcttcttgaatatccatttatccaatgagttattagccatataatcat |
33813061 |
T |
|
| Q |
419 |
aaactagaagcctatga |
435 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
33813060 |
aaactagaagtctatga |
33813044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 31029132 - 31028716
Alignment:
| Q |
19 |
tcattaggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatcc |
118 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
31029132 |
tcattaggatcataattcttccgtcccccgattatctcaagcaacatcatcccataactgtatacatcacttttctctgatatagcgtagtttgttatcc |
31029033 |
T |
|
| Q |
119 |
actcgggtgcaaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggc |
218 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31029032 |
actcaggtgcaaggtagccacgtgttcctcttagtgtcgtaaaaacatggctttgttctctattcatgagcttggctaaaccaaaatctgaaactttggc |
31028933 |
T |
|
| Q |
219 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||||| |
|
|
| T |
31028932 |
aatgaaatgatcatctagaagtacattttcaggcttgatgtcacagtgaacaatctttgagtcacattcttgatgtagataagctagcccttttgctgtt |
31028833 |
T |
|
| Q |
319 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
31028832 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaatgcactttttttcttcttgaatatccatttatccaatgagttattagccatatactcat |
31028733 |
T |
|
| Q |
419 |
aaactagaagcctatga |
435 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
31028732 |
aaactagaagcctatga |
31028716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 49464123 - 49463708
Alignment:
| Q |
19 |
tcattaggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatcc |
118 |
Q |
| |
|
||||||| |||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
49464123 |
tcattagtatcatagttcttccttccaccaataatctctagcaataccatcccatagctgtatacatcacttttctctgatatagcatagcttgttatcc |
49464024 |
T |
|
| Q |
119 |
actcgggtgcaaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggc |
218 |
Q |
| |
|
| || ||||||||||| ||||| ||||||| | ||| ||||||||||| |||| |||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
49464023 |
attcaggtgcaaggtatccacgtgttcctcgcattgttgtaaaaacatgactttgttctctattcatgagtttggctaaaccaaaatctgaaactttggc |
49463924 |
T |
|
| Q |
219 |
aatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgtt |
318 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| || |||||||| ||| |
|
|
| T |
49463923 |
catgaaatggtcatctagaagcacattttcaggtttgatgtcacaatgaacaatctttgaatcacaatcttcatgtagataagctagcccttttgccgtt |
49463824 |
T |
|
| Q |
319 |
cctaatgctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgt |
418 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
49463823 |
cctactgctatattataccttgtatcccaatccaaaagaaaatcaccttttttcttcttgaatatccatttatccaacgagttattagccatatactcat |
49463724 |
T |
|
| Q |
419 |
aaactagaagcctatg |
434 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
49463723 |
aaactaaaagcctatg |
49463708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 10070237 - 10070324
Alignment:
| Q |
187 |
agcttggctaaaccaaagtctgaaactttggcaatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatct |
274 |
Q |
| |
|
||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10070237 |
agcttggcttaaccaaagtctgaaattttagccatgaaataatcatctagaagcacattttcaggcttgatgtcacaatgaacaatct |
10070324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 354
Target Start/End: Original strand, 2528190 - 2528522
Alignment:
| Q |
22 |
ttaggatcataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccact |
121 |
Q |
| |
|
||||||||||| || |||||||| |||| ||||||| ||||||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
2528190 |
ttaggatcatagtttttccttcctccaataatctctaacaacaccattccatagctataaacatcacttttctctgatatagcatagtttgtgatccatt |
2528289 |
T |
|
| Q |
122 |
cgggtgcaaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaat |
221 |
Q |
| |
|
| ||||| | || || | |||||||| | ||| |||||||||||||||| ||| | ||||| ||||| || | ||| || || ||||||||||| |
|
|
| T |
2528290 |
ctggtgctaaataacctcttgttcctctcattgttgtaaaaacatggctttgttcacggttcatgagcttcgcaagaccgaaatcggaaactttggcttc |
2528389 |
T |
|
| Q |
222 |
gaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcct |
321 |
Q |
| |
|
|||| |||||||| ||| |||||||| ||||| || |||||||||||||||||||| ||||| |||| ||||| |||||| |||||||| ||||||||| |
|
|
| T |
2528390 |
aaaattatcatctaaaagcacattttctggtttaatatcacaatgaacaatctttgagtcacaatcttcatgcaaataagctagtcctttggctgttcct |
2528489 |
T |
|
| Q |
322 |
aatgctatattaaaccttgtatcccaatccaaa |
354 |
Q |
| |
|
| ||| || || ||||||| | |||||||||| |
|
|
| T |
2528490 |
actgcaattttgtaccttgtgttccaatccaaa |
2528522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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