View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_30 (Length: 438)
Name: NF21242_high_30
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 23916679 - 23917109
Alignment:
| Q |
1 |
acggatgccaaaatctacaatgtgaagagtttctacttccttggctagattcagaattgtatggttcgcgaaaatgattgcaagcttcttgaatggacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23916679 |
acggatgccaaaatctacaatgtgaagagtttctacttccttggctagattcagaattgtatggttcgcgaaaatgattgcaagcttcttgaatggacag |
23916778 |
T |
|
| Q |
101 |
gctgaaatatacatttggtacgcgttcaccatgtcggcagcagagtgtcttttggagtataaagcagtataaatctgagttccagtgccagccatgcgtg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23916779 |
gctgaaatatacatttggtacgctttcaccatgtcggcagcagagtttcttttggagtataaagcagtataaatctgagttccagtgccagccatgcgtg |
23916878 |
T |
|
| Q |
201 |
cttcaagagcattcgcaaaacaatgtgccagcctctgagatccatcacccagtggagaagaatactgccttatctgcctcaataactcgttagcatttgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23916879 |
cttcaagagcattcgcaaaacaatgtgccagcctctgagatccatcacccagtggagaagaatactgccttatctgcctcaataactcattagcatttgc |
23916978 |
T |
|
| Q |
301 |
acgatcatcagaagaaacatattgtgcacacagaaccaacattgtcctcaaatccacaacacccttcttgttgccttgtttcttaccacggctttttcca |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23916979 |
acgatcatcagaagaaacatattgagcacacagaaccaacattgtcctcaaatccacaacacccttcttgttgccttgtttcttaccacggctttttcca |
23917078 |
T |
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| Q |
401 |
ccaccagaattatttgcttcttctctctgct |
431 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
23917079 |
ccaccagaattatttgcttcttctttctgct |
23917109 |
T |
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