View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_34 (Length: 416)
Name: NF21242_high_34
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 46905394 - 46905776
Alignment:
| Q |
13 |
gaagataacgtttactgggctatcgatgtttctgataaggtacctgaattgggtactgacaaggagatggagttgagttttgtggagctccggactctca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46905394 |
gaagataacgtttactgggctatcgatgtttctgataaggtacctgaattgggtactgacaaggagatggagttgagttttgtagagctccggactctca |
46905493 |
T |
|
| Q |
113 |
tggtggccactgattgggaggatttgaaagcaatggaaaacttggctattgctggtaatgtaagttagttatcttgctaacatgataaatcaaactttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905494 |
tggtggccactgattgggaggatttgaaagcaatggaaaacttgactattgctggtaatgtaagttagttatcttgctaacatgataaatcaaactttga |
46905593 |
T |
|
| Q |
213 |
agtagtgnnnnnnnagttatctacttatcttggtgttaaatattagttttttatgaaatgagtaaatcgacaaattagtccttgaaactgtaagcattag |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905594 |
agtagtgtttttttagttatctacttatcttggtgttaaatattagttttttatgaaatgagtaaatcgacaaattagtccttgaaactgtaagcattag |
46905693 |
T |
|
| Q |
313 |
tccgaatagtccatgatttttgtggattagaaaatacatcagtaaaattgtggtgaagtgttggcaaaatagtatttctgtta |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46905694 |
tccgaatagtccatgatttttgtggattagaatatacatcagtaaaattgtggtgaagtgttggcaaaatagtatttctgtta |
46905776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 31586524 - 31586484
Alignment:
| Q |
269 |
aatgagtaaatcgacaaattagtccttgaaactgtaagcat |
309 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
31586524 |
aatgagtaaatagacaaattagtccttgaaattttaagcat |
31586484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University