View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_35 (Length: 415)
Name: NF21242_high_35
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_35 |
 | |
|
| [»] scaffold0781 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 37335230 - 37335429
Alignment:
| Q |
20 |
aaccatttcgcctcccactga----ctacctcaagagtcatgataccaaaagcaaaaacatctgttttttctgatagctcaccgtaggagatatattctg |
115 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |
|
|
| T |
37335230 |
aaccatttcgcctcccactaattaactacctcaagagtcatgataccaaaagcaaaaacatctgttttttctgatagctcaccgtaagagatgtattatg |
37335329 |
T |
|
| Q |
116 |
gtg-ctatgtatccactataccatgagaattagattacatgttagtttcatgctatttgaaaaataaa----atgttgagcaaataaaatcatatgaaac |
210 |
Q |
| |
|
||| | || |||||||| ||||||||| ||||| |||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
37335330 |
gtgtcaatatatccacttcaccatgagagttagactacatgttagtttcatgctatttgaaaagtgaaatatatgttgagcaaataaaatcatatgaaac |
37335429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 37335451 - 37335500
Alignment:
| Q |
310 |
ggacaagtttagagtccagcaaaatattctgacactttatatcacggtgt |
359 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
37335451 |
ggacatgtttagagtcgagcaaaatattttgacactttatatcacggtgt |
37335500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 5726 - 5694
Alignment:
| Q |
155 |
gttagtttcatgctatttgaaaaataaaatgtt |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
5726 |
gttagtttcgtgctatttgaaaaataaaatgtt |
5694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 2217270 - 2217238
Alignment:
| Q |
155 |
gttagtttcatgctatttgaaaaataaaatgtt |
187 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
2217270 |
gttagtttcgtgctatttgaaaaataaaatgtt |
2217238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University