View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_37 (Length: 407)

Name: NF21242_high_37
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_37
NF21242_high_37
[»] chr6 (12 HSPs)
chr6 (20-392)||(6519587-6519979)
chr6 (191-391)||(6466293-6466493)
chr6 (159-392)||(6497601-6497834)
chr6 (159-392)||(6460838-6461071)
chr6 (249-392)||(6472057-6472200)
chr6 (255-392)||(6529223-6529360)
chr6 (249-392)||(6506504-6506647)
chr6 (246-391)||(6515107-6515252)
chr6 (264-349)||(7204169-7204254)
chr6 (264-349)||(7238920-7239005)
chr6 (271-361)||(6458416-6458506)
chr6 (39-111)||(6466115-6466187)
[»] chr7 (3 HSPs)
chr7 (246-391)||(9664318-9664463)
chr7 (271-375)||(3752862-3752966)
chr7 (249-391)||(4047250-4047392)
[»] chr4 (1 HSPs)
chr4 (246-391)||(13535342-13535487)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 6519979 - 6519587
Alignment:
Q  20 gaataaaaagaaagaatctcatggcttgtagtgaaagaaagatgggttagttgtgtgacagaaaatgtcaaaaaaggacttcccctaacaagnnnnnnnc 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  6519979 gaataaaaagaaagaatatcatggcttgtagtgaaagaaagatgggttagttgtgtgacagaaaatgtcaaaaaaggacttcccctaacaagaaaaaaac 6519880  T
Q  120 gtaaatttgaagaagggat--------------------cattgtaagaagagattatgtgtttttcgttggaagtttttgtagaagaagctatggtaag 199  Q
    |||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6519879 gtaaatttgaagaagggatttccaaggtaacactgaggtcattgtaagaagagattatgtgtttttcgttggaagtttttgtagaagaagttatggtaag 6519780  T
Q  200 atcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6519779 atcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaacagaaagtgatgagtttgatgatttaatgaggtatggatga 6519680  T
Q  300 aaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgggaggggtttggatagtaaatttggagagaagaat 392  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6519679 atatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtagggaggggtttggatagtaaatttggagagaagaat 6519587  T

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Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 191 - 391
Target Start/End: Original strand, 6466293 - 6466493
Alignment:
Q  191 tatggtaagatcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaacagaaagtgatgagtttgatgatttgatgagg 290  Q
    |||||| |||||||  |||||||||||| |||| | ||||||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||     
T  6466293 tatggtgagatcagggttgaaaacttggtatatgaaagaagagttgaagaaacgagatgggtaagaaagagaaagtgatgagtttgaagatttgatgaga 6466392  T
Q  291 tatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgggaggggtttggatagtaaatttggagagaaga 390  Q
    ||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||||    
T  6466393 tatggatgaatgtattcaggttggtcaccatttttgagaacaaagttttggaagaaagagtttgtggggaggggtgtggatagcagatttggagagaaga 6466492  T
Q  391 a 391  Q
    |    
T  6466493 a 6466493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 392
Target Start/End: Original strand, 6497601 - 6497834
Alignment:
Q  159 tgtttttcgttggaagtttttgtagaagaagctatggtaagatcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaa 258  Q
    |||||||| ||||||||||| ||||  ||||  ||||||||||||||| |||||||||| |||||| |||||| | | | | ||   ||||| || ||||    
T  6497601 tgtttttcattggaagttttcgtagcggaagtgatggtaagatcagcagtgaaaacttgagatatagcagaagggctgatggaaatagatggatatgaaa 6497700  T
Q  259 cagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgg 358  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  6497701 cagaaagtgatgagtctgatgatttgatgaggtaaggatgaaaatattcaggttggtcaccgttgttgagaacaaagttttggaagaaagagtttgtggg 6497800  T
Q  359 gaggggtttggatagtaaatttggagagaagaat 392  Q
    ||||||||| ||||| | ||||  ||||||||||    
T  6497801 gaggggtttagatagcagatttttagagaagaat 6497834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 159 - 392
Target Start/End: Complemental strand, 6461071 - 6460838
Alignment:
Q  159 tgtttttcgttggaagtttttgtagaagaagctatggtaagatcagcattgaaaacttgggatataacagaagagtttaagaaacgtgatgggtaagaaa 258  Q
    |||||||| ||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||| |||||| | | | | || | ||||| || || |    
T  6461071 tgtttttcattggaagtttttgtagaggaagtgatggtaagatcagcagtgaaaacttgggatatagcagaagggctgatggaaagagatggatatgaga 6460972  T
Q  259 cagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgg 358  Q
    ||||||| |||||||| || ||| |||||||||| |||||||| ||||| ||||||||||| || | ||||||||||||||||||||| |||||||| ||    
T  6460971 cagaaagagatgagttggaagatctgatgaggtaaggatgaaagtattccggttggtcaccattgtcgagaacaaagttttggaagaaggagtttgtagg 6460872  T
Q  359 gaggggtttggatagtaaatttggagagaagaat 392  Q
    ||| ||||||||||| | ||||| ||||||||||    
T  6460871 gagtggtttggatagcagatttgaagagaagaat 6460838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 249 - 392
Target Start/End: Complemental strand, 6472200 - 6472057
Alignment:
Q  249 gggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaag 348  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| ||||| || |||| ||||||||||||||    
T  6472200 gggtaagaaacagaaagtgatgagtttgatgatttgatgaggtaaggatgaatgtattcaggttggtcaccattttttaggacaatgttttggaagaaag 6472101  T
Q  349 agtttgtcgggaggggtttggatagtaaatttggagagaagaat 392  Q
    ||||||| ||||||||| ||||||| |||||||| |||||||||    
T  6472100 agtttgtagggaggggtgtggatagcaaatttggtgagaagaat 6472057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 255 - 392
Target Start/End: Original strand, 6529223 - 6529360
Alignment:
Q  255 gaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttg 354  Q
    |||| |||||||||||||| ||| ||||||||||| ||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  6529223 gaaatagaaagtgatgagtctgaagatttgatgagatatggatgaatgtattcaggttggtcaccattgttgagaacaaagttttggaagaaagagtttg 6529322  T
Q  355 tcgggaggggtttggatagtaaatttggagagaagaat 392  Q
    | ||||||||| ||||||| | ||||||||||||||||    
T  6529323 tagggaggggtgtggatagcagatttggagagaagaat 6529360  T

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Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 6506504 - 6506647
Alignment:
Q  249 gggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaag 348  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||   ||||| || |||||||||||||||||||||||||    
T  6506504 gggtatgagacagaaagtgatgagtttgatgatttgatgaggtaaggatgaaagtattcaggtgcatcaccattgttgagaacaaagttttggaagaaag 6506603  T
Q  349 agtttgtcgggaggggtttggatagtaaatttggagagaagaat 392  Q
    ||||||| || |||||| ||||||| | ||||||||||||||||    
T  6506604 agtttgtaggcaggggtgtggatagcagatttggagagaagaat 6506647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 6515252 - 6515107
Alignment:
Q  246 gatgggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaaga 345  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||||| ||||| |  |||||||||   ||||| | | |||||  ||||||||||||||    
T  6515252 gatgggtatgaaaaagaaagtgatgagtttgttgatctgatgaggtaaggatggatgtattcaggtgtttcaccctctctgagagaaaagttttggaaga 6515153  T
Q  346 aagagtttgtcgggaggggtttggatagtaaatttggagagaagaa 391  Q
    |||||||||| ||||||||| | ||||| | |||||| ||||||||    
T  6515152 aagagtttgtggggaggggtgtagatagaagatttggggagaagaa 6515107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 7204254 - 7204169
Alignment:
Q  264 agtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaaga 349  Q
    |||| |||||| |||||||| |||||||| |||||||  ||||||||||||||||| ||  |||||||||||||||||||||||||    
T  7204254 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaaga 7204169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 7239005 - 7238920
Alignment:
Q  264 agtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaaga 349  Q
    |||| |||||| |||||||| |||||||| |||||||  ||||||||||||||||| ||  |||||||||||||||||||||||||    
T  7239005 agtggtgagttcgatgatttaatgaggtagggatgaatgtattcaggttggtcaccattgatgagaacaaagttttggaagaaaga 7238920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 6458416 - 6458506
Alignment:
Q  271 agtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgggag 361  Q
    ||||||| |||||||||||||| || ||||  || ||||||  |||||| ||||  |||||||| |||||||||||||||||||| |||||    
T  6458416 agtttgaggatttgatgaggtaagggtgaatgtactcaggtgtgtcaccattttgtagaacaaaattttggaagaaagagtttgttgggag 6458506  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 6466115 - 6466187
Alignment:
Q  39 catggcttgtagtgaaagaaagatgggttagttgtgtgacagaaaatgtcaaaaaaggacttcccctaacaag 111  Q
    ||||| |||| ||||  |||||| | ||| ||||||| ||||| ||||||||||| |||||||| ||||||||    
T  6466115 catggattgttgtgattgaaagaggtgttggttgtgttacagagaatgtcaaaaagggacttcctctaacaag 6466187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 9664463 - 9664318
Alignment:
Q  246 gatgggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaaga 345  Q
    ||||| || |||| ||||||||||||||| || ||||||| ||| || || ||||  ||||||  ||||||||| |||||||||||||||||||||||||    
T  9664463 gatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaaga 9664364  T
Q  346 aagagtttgtcgggaggggtttggatagtaaatttggagagaagaa 391  Q
    |||||||||| ||||||||| | ||||| | |||||||||||||||    
T  9664363 aagagtttgtagggaggggtgtagatagaagatttggagagaagaa 9664318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 3752966 - 3752862
Alignment:
Q  271 agtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaagagtttgtcgggaggggtttgga 370  Q
    ||||||| |||||||||||||| || ||||  |||||||||  |||||| || | |||||||||||||||||||||||||||||| ||||||||| ||||    
T  3752966 agtttgaggatttgatgaggtaagggtgaatgtattcaggtgtgtcaccattgtggagaacaaagttttggaagaaagagtttgtagggaggggtgtgga 3752867  T
Q  371 tagta 375  Q
    |||||    
T  3752866 tagta 3752862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 391
Target Start/End: Original strand, 4047250 - 4047392
Alignment:
Q  249 gggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaagaaag 348  Q
    ||||| |||||||| || || |||||||| |||||||  ||||| || ||||  |||||| |||| ||||| ||||  |||||||| ||||||||||| |    
T  4047250 gggtatgaaacagatagggaagagtttgaggatttgacaaggtaagggtgaatgtattcatgttgatcaccattttgtagaacaaaattttggaagaatg 4047349  T
Q  349 agtttgtcgggaggggtttggatagtaaatttggagagaagaa 391  Q
    ||||||| ||||| ||| |||||||||| ||| | ||||||||    
T  4047350 agtttgtagggagaggtgtggatagtaagttttgtgagaagaa 4047392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 13535487 - 13535342
Alignment:
Q  246 gatgggtaagaaacagaaagtgatgagtttgatgatttgatgaggtatggatgaaaatattcaggttggtcaccgtttttgagaacaaagttttggaaga 345  Q
    ||||| || |||| ||||||||||||||| || ||||||| ||| || || ||||  ||||||  ||||||||| |||||||||||||||||||||||||    
T  13535487 gatggatacgaaagagaaagtgatgagttcgacgatttgacgagataagggtgaatgtattcatattggtcaccatttttgagaacaaagttttggaaga 13535388  T
Q  346 aagagtttgtcgggaggggtttggatagtaaatttggagagaagaa 391  Q
    |||||||||| ||||||||| | ||||| | |||||||||||||||    
T  13535387 aagagtttgtagggaggggtgtagatagaagatttggagagaagaa 13535342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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