View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_high_40 (Length: 402)
Name: NF21242_high_40
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_40 |
 | |
|
| [»] scaffold0123 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 4499651 - 4500026
Alignment:
| Q |
8 |
agatggacatcatcaagaagacactacatttttaatttccaacagagtactaacggtgttaaatgaaaagggatataatatatattttaaaagaccttag |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4499651 |
agattgacatcatcaagaagacactacatttttaatttctaacagagtactaacggtgttaaatgaaaagggatataatatatattttaaaagaccttag |
4499750 |
T |
|
| Q |
108 |
gggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggttgtattcatcatatcggccaaca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4499751 |
gggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggttgtattcatcatatcggccaaca |
4499850 |
T |
|
| Q |
208 |
aatagcatcacgagcttggtttattcgatcacggtttaattaacgaaagagtttatattacaagcaaggatcctaaacgagtgtacagtagagtttatat |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
4499851 |
aatagcatcacgagcttggtttattcggtcacggtttaattaacgaaagagtttatattacaagcaaggatcctaaaccggcgtacagtacagtttatat |
4499950 |
T |
|
| Q |
308 |
tggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtttg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4499951 |
tggaaagaatgcatgagcgtgcatatacgatcggttgacatggatgtttgagttgttgtcgtcaacgggtggtttg |
4500026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 41805249 - 41805206
Alignment:
| Q |
88 |
tatattttaaaagaccttaggggaggttaatgtttattataaaa |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
41805249 |
tatattttaaaagatcttaggggaggtttatgtctattataaaa |
41805206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 13292 - 13354
Alignment:
| Q |
305 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||| | |||||| || ||||||| |
|
|
| T |
13292 |
tattggaaagaatgcatgagcgtgcatattcaattggttgacacgtatgtttcagatgtcgtc |
13354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 24374091 - 24374015
Alignment:
| Q |
304 |
atattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttgagttgtcgtcgtcaacgggtggtt |
381 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||| ||||||||| ||| ||| | |||||| ||||||||| |||| |
|
|
| T |
24374091 |
atattggtaagaatgcatgagcgttcatatccaatcggttgacatgaatg-ttgggatgtcgtggtcaacgggcggtt |
24374015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 39673807 - 39673766
Alignment:
| Q |
90 |
tattttaaaagaccttaggggaggttaatgtttattataaaa |
131 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
39673807 |
tattttaaaagaacttaggggaggttaatatctattataaaa |
39673766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 39673884 - 39673843
Alignment:
| Q |
93 |
tttaaaagaccttaggggaggttaatgtttattataaaatta |
134 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
39673884 |
tttaaaagaacttaggggaggttaatatctattataaaatta |
39673843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 13606496 - 13606444
Alignment:
| Q |
305 |
tattggaaagaatgcatgagcgtgcatatacgatcagttgacatggatgtttg |
357 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||| || |||||||||||||| |
|
|
| T |
13606496 |
tattggaaagagtgcatgagcgttcatatccaatcggtggacatggatgtttg |
13606444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University