View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_42 (Length: 400)

Name: NF21242_high_42
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_42
NF21242_high_42
[»] chr1 (3 HSPs)
chr1 (243-400)||(13131470-13131634)
chr1 (8-85)||(13132416-13132496)
chr1 (234-302)||(13136137-13136205)
[»] scaffold0999 (2 HSPs)
scaffold0999 (85-228)||(1116-1259)
scaffold0999 (8-63)||(447-502)
[»] chr8 (6 HSPs)
chr8 (85-232)||(19946601-19946748)
chr8 (85-232)||(27830603-27830755)
chr8 (85-135)||(17030804-17030854)
chr8 (85-135)||(17031739-17031789)
chr8 (85-135)||(17561240-17561290)
chr8 (85-135)||(17562175-17562225)
[»] chr5 (1 HSPs)
chr5 (85-228)||(38962131-38962274)
[»] chr2 (1 HSPs)
chr2 (85-232)||(12820496-12820643)
[»] chr4 (1 HSPs)
chr4 (85-226)||(10077658-10077799)
[»] chr3 (2 HSPs)
chr3 (85-197)||(9020852-9020961)
chr3 (97-135)||(7471347-7471385)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 13131634 - 13131470
Alignment:
Q  243 attattctgctgacttattgaaggtacacgaaataaacaaactacagtaagaactttcaagaagcacatagaaaaatgagaacactgaagacaacaagg- 341  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13131634 attattctgctgacttattgaaggtacacgaattaaacaaactacagtaagaactttcaagaagcacatagaaaaatgagaacactgaagacaacaagga 13131535  T
Q  342 ------agaacatggaaaatccgagggtgaggaagagtctacgagaagaagaaagaacaagatga 400  Q
          ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13131534 tttagaagaacatggaaaatccgagggtgaggaagagtctatgagaagaagaaagaacaagatga 13131470  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 13132496 - 13132416
Alignment:
Q  8 ccaagaatatccaaaacaattactac---ccaaggaagctagaaagatttataggaccatgcgaatcgtagaggctccaca 85  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13132496 ccaagaatatccaaaacaattactactacccaaggaagctagaaagatttataggaccacgcgaatcgtagaggctccaca 13132416  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 13136137 - 13136205
Alignment:
Q  234 tagtgaaaaattattctgctgacttattgaaggtacacgaaataaacaaactacagtaagaactttcaa 302  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||    
T  13136137 tagtgaaatattattctgctgaattattgaaggtacacgaattaaacaaactaccgttagaactttcaa 13136205  T

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Target: scaffold0999 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 1116 - 1259
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  1116 atattccaaatatttagtgccaaaacagtgtttaaaatattcattatgtttatctaactcacaagaatgacacaattatattttgataaacatcaaattt 1215  T
Q  185 tcaaaaatgacatgaaagtacactcatacaccaaaacatcacca 228  Q
     ||||| ||||||||||||||| ||||||| |||||||||||||    
T  1216 gcaaaagtgacatgaaagtacagtcatacaacaaaacatcacca 1259  T

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Target: scaffold0999; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 447 - 502
Alignment:
Q  8 ccaagaatatccaaaacaattactacccaaggaagctagaaagatttataggacca 63  Q
    |||||||||| ||| |||||||||||| ||||||||||| |||||||| |||||||    
T  447 ccaagaatatacaacacaattactacctaaggaagctaggaagatttacaggacca 502  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 19946748 - 19946601
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    ||||| ||||| |||||||  |||| ||||||||| |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  19946748 atatttcaaatgtttagtggtaaaataatgtttaagatattcattatgtttatctaactatcaagaatgtcacaattatattttgataaacatcaaattt 19946649  T
Q  185 tcaaaaatgacatgaaagtacactcatacaccaaaacatcaccacata 232  Q
     ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  19946648 gcaaaagtgacatgaaagtacactcatacaacaaaacatcaccacata 19946601  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 27830755 - 27830603
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgttt-----atctaactcccaagaatgtcacaattatatattgataaacatca 179  Q
    ||||| |||||||||||||  |||| ||||||||||||||||||| |||||     |||||| || ||||||||||| ||| |||| ||||| |||||||    
T  27830755 atatttcaaatatttagtgttaaaataatgtttaaaatattcattgtgttttccatatctaagtctcaagaatgtcataataatattttgatgaacatca 27830656  T
Q  180 aattttcaaaaatgacatgaaagtacactcatacaccaaaacatcaccacata 232  Q
     ||||  |||| | |||| |||||||||||||  | ||||||||| |||||||    
T  27830655 tatttgaaaaagttacataaaagtacactcatgtaacaaaacatcgccacata 27830603  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 17030804 - 17030854
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgttt 135  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||    
T  17030804 atattcctaatttttagtgccaaaataatgtttaacatattcattgtgttt 17030854  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 17031789 - 17031739
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgttt 135  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||    
T  17031789 atattcccaatttttagtgccaaaataatgtttaacatattcattgtgttt 17031739  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 17561240 - 17561290
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgttt 135  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||    
T  17561240 atattcctaatttttagtgccaaaataatgtttaacatattcattgtgttt 17561290  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 17562225 - 17562175
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgttt 135  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||||| |||||    
T  17562225 atattcccaatttttagtgccaaaataatgtttaacatattcattgtgttt 17562175  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 38962131 - 38962274
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||||||| ||| |||| |||||||||    
T  38962131 atattccaaatatttagtgctaaaataatgtttaaaatattcattttgtttatctaactttcaagaatgttacaattatattttggtaaatatcaaattt 38962230  T
Q  185 tcaaaaatgacatgaaagtacactcatacaccaaaacatcacca 228  Q
     ||||| ||||||||||||||||||||||| |||||||||||||    
T  38962231 gcaaaagtgacatgaaagtacactcatacaacaaaacatcacca 38962274  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 12820496 - 12820643
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    ||||| ||||| |||||||  |||| ||||||||| |||||||||||||||||||||||  ||| ||||||| |||||||| |||| |||||||||||||    
T  12820496 atatttcaaatgtttagtggtaaaataatgtttaagatattcattatgtttatctaactatcaaaaatgtcataattatattttgagaaacatcaaattt 12820595  T
Q  185 tcaaaaatgacatgaaagtacactcatacaccaaaacatcaccacata 232  Q
     ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  12820596 gcaaaagtgacatgaaagtacactcatacaacaaaacatcaccacata 12820643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 226
Target Start/End: Original strand, 10077658 - 10077799
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    ||||| |||||||||| ||| |||| |||||| | |||||||| |||||||||  ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  10077658 atatttcaaatatttaatgctaaaataatgttaataatattcaatatgtttattaaactctcaagaatgtcacaattatattttgataaacatcagattt 10077757  T
Q  185 tcaaaaatgacatgaaagtacactcatacaccaaaacatcac 226  Q
      |||| |||||||||||| ||||||| || |||||||||||    
T  10077758 gtaaaagtgacatgaaagtgcactcattcaacaaaacatcac 10077799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 9020852 - 9020961
Alignment:
Q  85 atattccaaatatttagtgccaaaacaatgtttaaaatattcattatgtttatctaactcccaagaatgtcacaattatatattgataaacatcaaattt 184  Q
    |||||||||||||||   || ||||| ||||||||||| || |||||||||||||| ||| | | ||||||| | |||||| ||||||||||||||||||    
T  9020852 atattccaaatattt---gctaaaacgatgtttaaaatttttattatgtttatctagctctcgataatgtcatacttatattttgataaacatcaaattt 9020948  T
Q  185 tcaaaaatgacat 197  Q
     ||||||||||||    
T  9020949 gcaaaaatgacat 9020961  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 7471347 - 7471385
Alignment:
Q  97 tttagtgccaaaacaatgtttaaaatattcattatgttt 135  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  7471347 tttagtgctaaaacaatgtttaaaatattcattgtgttt 7471385  T

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