View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_44 (Length: 394)
Name: NF21242_high_44
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 35502638 - 35502274
Alignment:
| Q |
15 |
agacggaccccaagtttttctactgtcatcatgcaaaacttactaggcagagtttcaatcaaagcatttgggattaacataatgatcagtttgtcagagc |
114 |
Q |
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| T |
35502638 |
agacggaccccaagtctttctactgtcatcatgcaaaacttactaggtagagtttcaatcaaagcatttgggattaacataatgatcagtttgtcagagc |
35502539 |
T |
|
| Q |
115 |
aagtctccaattcttacaattgagaatcagaaggtttgcaatgtaaataatattgtgtaaggaaaatattattctcaatgctccccgtgttcaaattagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35502538 |
aagtctccaattcttacaattgagaatcagaaggtttgcaatgtaaataatattgtgtaaggaaaatattattctcaatgctccccgtgttcaaattagt |
35502439 |
T |
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| Q |
215 |
tgaaataaatcttgtagttgctgcaactacaacccagtgtgctttatatcatacttcataaactgcatatttcttaattaaacactcaataacaactaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35502438 |
tgaaataaatcttgtagttgctgcaactacaacccaatgtgctttatatcatacttcataaactgcatatttcttaattaaacactcaataacaactaat |
35502339 |
T |
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| Q |
315 |
aatgctgtaaattacctttcttcaagggaataattagctcacaatattggtcctaactctataat |
379 |
Q |
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| T |
35502338 |
aatgctgtaaattacctttcttcaagggaataattagctcacaatattggtcctaactctataat |
35502274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 374
Target Start/End: Complemental strand, 35510847 - 35510745
Alignment:
| Q |
266 |
tacttcataaactgcatatttcttaattaaacactcaataacaactaataatgctgtaaattacctttcttcaagggaataattagctcacaatattggt |
365 |
Q |
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|||| ||||||||||||||||||| |||| ||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
35510847 |
tactccataaactgcatatttcttggttaatcactcaataacaattaat---gctgtaaattcactttc---aagggaataattagctcacaacattggt |
35510754 |
T |
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| Q |
366 |
cctaactct |
374 |
Q |
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||||||||| |
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| T |
35510753 |
cctaactct |
35510745 |
T |
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