View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_47 (Length: 375)
Name: NF21242_high_47
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 47895343 - 47895695
Alignment:
| Q |
7 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttctggggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
106 |
Q |
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| T |
47895343 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
47895442 |
T |
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| Q |
107 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnn-gtattttgagcttgaaatggaacaa |
205 |
Q |
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| T |
47895443 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgaggaaaaaaaagtattttgagcttgaaatggaacaa |
47895542 |
T |
|
| Q |
206 |
aagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgttgaaaaag |
305 |
Q |
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| T |
47895543 |
aagcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgttgaaaaag |
47895642 |
T |
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| Q |
306 |
agcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcact |
358 |
Q |
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| T |
47895643 |
agcaagttgtgagtatgatctctgagagaatgaaggttcaaaagcaaggcact |
47895695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 31214203 - 31213852
Alignment:
| Q |
7 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttctggggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
106 |
Q |
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| T |
31214203 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttcttgggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
31214104 |
T |
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| Q |
107 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaatggaacaaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31214103 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaatggaacaaa |
31214004 |
T |
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| Q |
207 |
agcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgttgaaaaaga |
306 |
Q |
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| T |
31214003 |
agcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgttgaaaaaga |
31213904 |
T |
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| Q |
307 |
gcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcact |
358 |
Q |
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| T |
31213903 |
gcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcact |
31213852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 358
Target Start/End: Complemental strand, 31219958 - 31219607
Alignment:
| Q |
7 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttctggggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219958 |
tctcttactgctacttctgttctcagtagatatgaatgattcgttgttcttctagggtgtattccaagatcgaaaggagaagaaagtggattcttctgta |
31219859 |
T |
|
| Q |
107 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagnnnnnnnngtattttgagcttgaaatggaacaaa |
206 |
Q |
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| T |
31219858 |
aagagaatgctggagatgaaagagaaagaattatggttgcagttgcagcagaaactttttgacgagaaaaaaatgtattttgagcttgaaatggaacaaa |
31219759 |
T |
|
| Q |
207 |
agcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttagggaaaccaagattgttgaaaaaga |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31219758 |
agcggaaatccctcattaagaagtttaggagacaggaggaagccttagagtatagggaagctgaagtcaaccttagggaaaccaaggttgttgaaaaaga |
31219659 |
T |
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| Q |
307 |
gcaagttgtgagtatgatctctgagagaataaaggttcaaaagcaaggcact |
358 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31219658 |
gcaagttgtgaggatgatctctgagagaataaaggttcaaaagcaaggcact |
31219607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 4960170 - 4960014
Alignment:
| Q |
185 |
tttgagcttgaaatggaacaaaagcggaaatccctcattaagaagtttaggaggcaggaggaagccttagagtataggaaagctgaagtcaaccttaggg |
284 |
Q |
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||||||||||||||||||||||||||||||||||| | || ||||||| || ||||||||||||| ||||||||| || |||||||||| ||||| |
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| T |
4960170 |
tttgagcttgaaatggaacaaaagcggaaatccctagctgaggagtttagcagcaaggaggaagccttggagtatagggaaatcgaagtcaaccataggg |
4960071 |
T |
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| Q |
285 |
aaaccaagattgttgaaaaagagcaagttgtgagtatgatctctgagagaataaagg |
341 |
Q |
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|||| ||| ||| || ||||||||| | |||||| || |||||||||||||||| |
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| T |
4960070 |
aaacgaaggttggaaaagaagagcaagctttgagtacgaagtctgagagaataaagg |
4960014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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