View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_48 (Length: 374)
Name: NF21242_high_48
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 40141068 - 40140718
Alignment:
| Q |
18 |
agagatactgtatggaccatatgaggttgtttggccacttcctcctggtgtgaacaaggacaatgtatcagctgaatttttgtaagttatattttagtct |
117 |
Q |
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| T |
40141068 |
agagatactgtatggaccatatgaggttgtttggccacttcctcatggtgtgaacaaggacaatgtatcagctgaatttttgtaagttatattttagtct |
40140969 |
T |
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| Q |
118 |
tactcacatggttcttgactacagtctcnnnnnnnaattggtttcactggctataatttaaagaaaaacctct--tttaaattatagattgaaaatcctg |
215 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
40140968 |
tactcacatggttcttgactatagtctctttttttaattggtttcactggctataatttaaagaaaaacctctattttaaattatagattgacaatcctg |
40140869 |
T |
|
| Q |
216 |
aaactagaaaagtaattgaggtggtgttcctcatgcttattaagaacttaagatgacatttctgaaacaaatttaagaacctagctactgcactatttta |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40140868 |
aaactagaaaagtaattgaggcggtgttcctcatgcttattaagaacttaagatcacatttctgaaacaaatttaagaacctagctactgcactatttta |
40140769 |
T |
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| Q |
316 |
gtgataaagagttactgacttgtcataaactttattgtttgttaagaataa |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40140768 |
gtgataaagagttactgacttgtcataaactttattgtttgttaagaataa |
40140718 |
T |
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