View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_52 (Length: 363)
Name: NF21242_high_52
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_52 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 17827035 - 17826690
Alignment:
| Q |
18 |
cgaagcaggtttaatgacaaaaaaccaaattggagattagcagttaatagcttcacctcggtagtagctttgtctaggaataatacttacaaagcatcta |
117 |
Q |
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| T |
17827035 |
cgaagcaggtttaatgacaaaaatccaaattagagattagcagttaatagcatcacctcgtcagtagctttgtctgggaataatacttccaaaagatcta |
17826936 |
T |
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| Q |
118 |
ccgcatctgtcagagacttcataatcttgaagaagttcaacatcaagattaaacctcccaaagctcctattattaaagaagtaatatggtctcctcctat |
217 |
Q |
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| T |
17826935 |
cctcatctgtcagagacttcataatcttgaaaaagttcaacatcaagattaaacctcccaaagctcctattattaaagaagtcatatggtctcctcctat |
17826836 |
T |
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| Q |
218 |
taatgcctggatcaagtgcaacactgacggctcctctactcttaatacatctgcatataggggcattttcagaaactcaaactcggtcttcttggcttgt |
317 |
Q |
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| T |
17826835 |
taatgcctggatcaagtgcaacaatgacggctcctctactcttaatacatctgcatgtgggggcattttcagaaactcaaactcgatcttcttggcttgt |
17826736 |
T |
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| Q |
318 |
tttgtagagaacttgggagggggtaatgtgttcgttgctaagctct |
363 |
Q |
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| T |
17826735 |
tttgcagagaacttgggagggggtaatgcgttcgttgctgagctct |
17826690 |
T |
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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 23921650 - 23921589
Alignment:
| Q |
294 |
tcaaactcggtcttcttggcttgttttgtagagaacttgggagggggtaatgtgttcgttgc |
355 |
Q |
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| T |
23921650 |
tcaaactcggtcttcttgtcttgttttgcagagaacttgggagtgggtaatgcgttcgttgc |
23921589 |
T |
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