View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_6 (Length: 620)
Name: NF21242_high_6
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_6 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 36148983 - 36149585
Alignment:
| Q |
18 |
atatgagagagatagaacttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36148983 |
atatgagagtgatagaacttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc |
36149082 |
T |
|
| Q |
118 |
agtgtcgacatttgcagcacgtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149083 |
agtgtcgacatttgcagcacgtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaa |
36149182 |
T |
|
| Q |
218 |
tcacctacatattccaaacgttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149183 |
tcacctacatattccaaacgttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgt |
36149282 |
T |
|
| Q |
318 |
attcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149283 |
attcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtcc |
36149382 |
T |
|
| Q |
418 |
ttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtgga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36149383 |
ttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtgga |
36149482 |
T |
|
| Q |
518 |
attacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttctt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149483 |
attacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttctt |
36149582 |
T |
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| Q |
618 |
ctt |
620 |
Q |
| |
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||| |
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| T |
36149583 |
ctt |
36149585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 36083092 - 36083412
Alignment:
| Q |
24 |
gagagatagaacttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtc |
123 |
Q |
| |
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|||||| ||||||||||| ||||||||| || || |||||||| |||| ||||||||| ||||||| ||||| || |||||||| |||||||||||||| |
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| T |
36083092 |
gagagagagaacttacttcgtctccaagcagtggctttttgtgacgcacataacgatgtaaaccatatttgatggctacacgtgcaagtttttcagtgtc |
36083191 |
T |
|
| Q |
124 |
gacatttgcagcacgtaaacgggtcaagtgacctggtgctagggttggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacct |
223 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
36083192 |
gacatttgcagcacgtaaacgggtcaagtgacctggtgccagcgttggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacct |
36083291 |
T |
|
| Q |
224 |
acatattccaaacgttcatatgataagccattctcagcaccataagtaccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaa |
323 |
Q |
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| ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| | |
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| T |
36083292 |
atgtattccaaacgctcataagataagccattctcagcaccgtaagtacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattcta |
36083391 |
T |
|
| Q |
324 |
gaatggcttcaacttcatgca |
344 |
Q |
| |
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|||| ||||| |||||||||| |
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| T |
36083392 |
gaattgcttccacttcatgca |
36083412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 36173472 - 36173567
Alignment:
| Q |
34 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
129 |
Q |
| |
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|||||||| ||||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||| ||| ||||| |
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| T |
36173472 |
acttacttcctctccaagttgaggttttttgtgacgcaaataacgatccaatccatgtttgatagccacacgtgccagcttttcagagtccacatt |
36173567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 36160161 - 36160257
Alignment:
| Q |
34 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacattt |
130 |
Q |
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||||||||| ||||||||| | || |||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||| ||||||| ||| |||||| |
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| T |
36160161 |
acttacttgctctccaagttgtggctttttgtgacgcaaataacgatccaacccatgattgatagccactcgtgccagcttttcagagtccacattt |
36160257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 488
Target Start/End: Original strand, 36083456 - 36083556
Alignment:
| Q |
391 |
ttccttcacgtgtgctacttcttgtccttgattaggagagtg---ttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttct |
487 |
Q |
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|||||||| |||| || ||||||||||||| || |||||||| |||||||||||| | |||||| ||||| |||||||||| || ||||||| |||| |
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| T |
36083456 |
ttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgtttggaggagaagtgcttgttct |
36083555 |
T |
|
| Q |
488 |
t |
488 |
Q |
| |
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| |
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| T |
36083556 |
t |
36083556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
| Q |
425 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
488 |
Q |
| |
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||||||| ||||||||| || |||||||| ||||| |||||||||| || ||||||||||||| |
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| T |
36149759 |
ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
36149822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 620
Target Start/End: Original strand, 36083446 - 36083508
Alignment:
| Q |
561 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctt |
620 |
Q |
| |
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|||||||| ||||| ||||| | |||||||||||| ||||| ||||||||||||||||||| |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctt |
36083508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 9e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 275 - 616
Target Start/End: Complemental strand, 26527763 - 26527407
Alignment:
| Q |
275 |
tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct |
374 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| |
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| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct |
26527664 |
T |
|
| Q |
375 |
ctgcatcagtctcatcttccttcacgtgtgctacttctt---------gtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgt |
465 |
Q |
| |
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| |||||| |||||| |||||||| |||| || |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26527663 |
ccgcatcattctcattttccttcatgtgttcttcttcttcttcttcttgtccttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgt |
26527564 |
T |
|
| Q |
466 |
ttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcg------gcggtgaaggaggc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| || ||| ||| |||||| | |||||||||||| |
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| T |
26527563 |
ttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggggaatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggc |
26527464 |
T |
|
| Q |
560 |
ggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttct |
616 |
Q |
| |
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||| ||||| |||| ||||| | ||||||| || | | || ||||||||||||||| |
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|
| T |
26527463 |
ggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtgttcttct |
26527407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
| Q |
425 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
488 |
Q |
| |
|
||||||||||||||| | || |||||||| ||||| |||||||||| || ||||||||||||| |
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| T |
26527421 |
ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
26527358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 10489788 - 10489715
Alignment:
| Q |
44 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttc |
117 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || ||| ||||| ||||| |||||||||||||||||||| |
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| T |
10489788 |
tctccaagttgaggctttttgtgtcgcaaataaccatccaacccatgtttgatagccacacgtgccagtttttc |
10489715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 17453724 - 17453819
Alignment:
| Q |
34 |
acttacttggtctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcagtgtcgacatt |
129 |
Q |
| |
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||||||||| ||| ||||| |||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||| ||||| |
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| T |
17453724 |
acttacttgctctgcaagttgaggttttttgtgtcgcaaataacgacccaacccatgtttgatagccacacgtgcgtgttttttagagtccacatt |
17453819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 17454787 - 17454712
Alignment:
| Q |
44 |
tctccaagtagaggttttttgtgtcgcaaataacgatgcaaaccatgcttgattgccacacgtgccagtttttcag |
119 |
Q |
| |
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||||||||| |||| ||||||||| |||||||||||| ||| ||||| ||||| || |||| |||||||||||||| |
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|
| T |
17454787 |
tctccaagttgaggctttttgtgttgcaaataacgatccaacccatgtttgatagctacacatgccagtttttcag |
17454712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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