View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_60 (Length: 334)

Name: NF21242_high_60
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_60
NF21242_high_60
[»] chr3 (1 HSPs)
chr3 (18-302)||(8523006-8523290)
[»] chr5 (8 HSPs)
chr5 (21-255)||(42128830-42129064)
chr5 (51-255)||(42117709-42117913)
chr5 (51-239)||(34240487-34240675)
chr5 (21-239)||(42123461-42123679)
chr5 (18-228)||(34232711-34232924)
chr5 (18-241)||(41713466-41713693)
chr5 (129-205)||(41572039-41572115)
chr5 (129-205)||(41617678-41617754)
[»] chr2 (3 HSPs)
chr2 (18-266)||(12248396-12248644)
chr2 (18-266)||(11994285-11994533)
chr2 (21-239)||(32681825-32682043)
[»] chr4 (1 HSPs)
chr4 (18-239)||(11118106-11118327)
[»] chr6 (2 HSPs)
chr6 (23-239)||(25522945-25523161)
chr6 (18-239)||(24140793-24141013)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 8523290 - 8523006
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||| ||||| | |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  8523290 ggcaacaacataatagaagacaattttcctcattggcttgaaacactgcattatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattg 8523191  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||    
T  8523190 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaaacaataactttagtggtcctctaccaaaatcctatttcaaaaagtt 8523091  T
Q  218 tgaagccatgatgaatgttactgagtttgaatacatgaggaatagtatatggaatggagatcactatgttaggaacccatactca 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    ||| ||||||||||||||||    
T  8523090 tgaagccatgatgaatgttactgagttggaatacatgaggaatagaatatggaatggagatggtgatggtaggaacccatactca 8523006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 42129064 - 42128830
Alignment:
Q  21 agcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattatta 120  Q
    ||||||||  |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||  ||    
T  42129064 agcaacaacatagaagacaattttcctgattggcttcaaacactgcaatatttgaaagtgttggttttgcaagacaacaagttgcatggtatcattgcta 42128965  T
Q  121 atccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttga 220  Q
    ||| ||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||||    
T  42128964 atctaaagatcaagcatccatttccaagtttaattatttttgatatctcaggcaataactttagcggtccgctaccaaaagcctattttaaaaagtttga 42128865  T
Q  221 agccatgatgaatgttactgagtttgaatacatga 255  Q
    |||||||| |||||||||| | || ||||||||||    
T  42128864 agccatgaagaatgttactcaattggaatacatga 42128830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 42117913 - 42117709
Alignment:
Q  51 tggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattattaatccaaagatcaagcatccatttccagatt 150  Q
    |||||||||||||| ||||||||| |||||||| |||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||    
T  42117913 tggcttcaaacactacaatatttgcaagtgttggttttacaagacaataagttgcatggtatcattcctaatccaaagatcaagcatccatttccaagtt 42117814  T
Q  151 taactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttgaagccatgatgaatgttactgagtttgaata 250  Q
    ||| ||||||| |||||||| | |||||||||||  |||| ||||||||||| | ||| ||||| ||||||||||||| ||| |||||||| || |||||    
T  42117813 taattattttttatatctcaggaaataactttagctgtccgctaccaaaagcatttttaaaaaaatttgaagccatgaagaaagttactgaattggaata 42117714  T
Q  251 catga 255  Q
    |||||    
T  42117713 catga 42117709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 34240487 - 34240675
Alignment:
Q  51 tggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattattaatccaaagatcaagcatccatttccagatt 150  Q
    ||||||||||| || ||||| ||||||||| || ||||||||||||||||||||||||||  ||||   |||  |||||||| ||||||||||||   ||    
T  34240487 tggcttcaaactctccaatacttgaaagtgctggttttgcgagacaataagttgcatggtcacattgccaatttaaagatcaggcatccatttcctagtt 34240586  T
Q  151 taactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttgaagccatgatgaatgttact 239  Q
    ||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||||||    
T  34240587 tagttatttttgatatctcaagcaataactttactggtccgctaccaaaagcctatttaaaatattttgaagccatgaagaaagttact 34240675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 42123679 - 42123461
Alignment:
Q  21 agcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattatta 120  Q
    ||||||||| |||||| |||||||||| ||||| |||||||||| ||| ||||||||||  || ||||||||||||||||||| ||||||  |||    |    
T  42123679 agcaacaaaatagaagacaattttcctgattggtttcaaacacttcaagatttgaaagtactggttttgcgagacaataagtttcatggtcccatcgcca 42123580  T
Q  121 atccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttga 220  Q
    ||  ||||||  ||| || |||||||   ||||  ||||||||||||||  | ||||||||| |||||  |||||||||||||||||  ||||||| |||    
T  42123579 atttaaagattgagcgtctatttccaagcttaatcatttttgatatctctggaaataactttggtggttttctaccaaaagcctattcaaaaaattatga 42123480  T
Q  221 agccatgatgaatgttact 239  Q
    |||||||| ||||| ||||    
T  42123479 agccatgaagaatgatact 42123461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 34232711 - 34232924
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||||||||||| |||||| ||| |||||| | ||| |||||||  ||||| ||||||||||| |  |||| ||||| |||||||||||||||  ||||     
T  34232711 ggcagcaacaaaatagaagacaaatttcctgactggattcaaactttgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattg 34232810  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctacca---aaagcctatttcaaaaa 214  Q
      |||  |||||||||| ||||||||||   ||||  |||||||||||||||  | ||||||||||||||||| ||||||   |||| ||||||||||||    
T  34232811 ccaatttaaagatcaagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaa 34232910  T
Q  215 ttttgaagccatga 228  Q
     | |||||||||||    
T  34232911 gtatgaagccatga 34232924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 41713466 - 41713693
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||| ||| ||| ||||||||| ||||||| | ||||||| ||| |||    |||||||||||||| ||||| |  |||| ||||||||||||   |||     
T  41713466 ggcaacaataaaatagaaggcagttttcctgagtggcttccaactctgtctcatttgaaagtgttggttttgagtaacaacaagttgcatggtcctattt 41713565  T
Q  118 ttaatccaaagatcaagcatccatttcc-agatt--taactattt-ttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaa 213  Q
      |||  ||||||||| ||||||||||| || ||  ||| || || ||||||||||  ||||| |||| |||||||| ||||||||||||||||| ||||    
T  41713566 ccaatttaaagatcaaacatccatttcccagtttattaattaattgttgatatctcgggcaatgacttcagtggtccgctaccaaaagcctatttaaaaa 41713665  T
Q  214 attttgaagccatgatgaatgttactga 241  Q
    ||| | || |||||| ||||||||||||    
T  41713666 attatcaaaccatgaagaatgttactga 41713693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 41572039 - 41572115
Alignment:
Q  129 atcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 205  Q
    |||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41572039 atcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 41617678 - 41617754
Alignment:
Q  129 atcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 205  Q
    |||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41617678 atcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 12248644 - 12248396
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||||||||||| |||||| | | |||||| |||||||||||||||||||| |||||||||| |||||  |||||||||||||||||||||||||||||     
T  12248644 ggcagcaacaaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatggtatcattg 12248545  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattt 217  Q
    |||||| ||| |  |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||  |||| ||    
T  12248544 ttaatctaaatacaaagcatccatttccaagtttaactatttttgatatctcaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtt 12248445  T
Q  218 tgaagccatgatgaatgttactgagtttgaatacatgaggaatagtata 266  Q
    ||||||||||| ||||||| |||| || | |||||||| ||||| ||||    
T  12248444 tgaagccatgaagaatgttgctgaattggtatacatgacgaataatata 12248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 11994285 - 11994533
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||||||||||| |||||| | | |||||| |||||||||||||||||||| |||||||||| |||||  ||||||||||||||||||||| |||||||     
T  11994285 ggcagcaacaaaatagaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatgatatcattg 11994384  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattt 217  Q
    |||||| ||| |  |||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||  |||| ||    
T  11994385 ttaatctaaatacaaagcatccatttccaagtttaactatttttgatatctaaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtt 11994484  T
Q  218 tgaagccatgatgaatgttactgagtttgaatacatgaggaatagtata 266  Q
    ||||||||||| ||||||| |||| || | |||||||||||||| ||||    
T  11994485 tgaagccatgaagaatgttgctgaattggtatacatgaggaataatata 11994533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 32681825 - 32682043
Alignment:
Q  21 agcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattatta 120  Q
    ||||||||| |||| | |||||| ||  |||||||||| ||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||  |||| | |    
T  32681825 agcaacaaaatagacgacaatttcccatattggcttcatacaatgcaagatttgaaagtattggttttgcgtgacaacaagttgcatggtcccattgtca 32681924  T
Q  121 atccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttga 220  Q
    ||  ||||| | | |||| ||||||    ||||  ||||||||||||||  | || ||||| ||||||  | || ||||||| ||||| ||   ||||||    
T  32681925 atttaaagaacgaacatctatttcctagcttaatcatttttgatatctctggaaacaacttcagtggttttatatcaaaagcttatttaaatttttttga 32682024  T
Q  221 agccatgatgaatgttact 239  Q
    |||||||| ||||||||||    
T  32682025 agccatgaagaatgttact 32682043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 11118327 - 11118106
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||||||||| | |||||| || ||||||| |||||||||||||| ||| | |||||||||| ||| ||||||||||||||||||||||||||  ||||     
T  11118327 ggcagcaacagaatagaagacagttttcctgattggcttcaaacattgccagatttgaaagtattggttttgcgagacaataagttgcatggtcccattg 11118228  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattt 217  Q
      |||  ||||||| |||||| |||||||   ||||  ||||||||||||||  |||| | ||||||||||  |||||||||||||||||| ||||| |     
T  11118227 aaaatttaaagatcgagcatctatttccaagcttaatcatttttgatatctcgggcaacagctttagtggttttctaccaaaagcctatttaaaaaacta 11118128  T
Q  218 tgaagccatgatgaatgttact 239  Q
    |||||| |||| ||||||||||    
T  11118127 tgaagctatgaagaatgttact 11118106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 25522945 - 25523161
Alignment:
Q  23 caacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattattaat 122  Q
    ||||||| |||||| |||||||||  |||||||||||||| ||||  |||||||||||||| ||||||||||||| ||||||||||||  | || | |||    
T  25522945 caacaaaatagaagacaattttccggattggcttcaaacaatgcaggatttgaaagtgttggttttgcgagacaacaagttgcatggttcccttgtcaat 25523044  T
Q  123 ccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattttgaag 222  Q
      ||| ||||||||| |||||| |  |||||  ||||||||||||||| | || || ||  |||||  |||||||||||||||||| | ||||| |||||    
T  25523045 ttaaaaatcaagcattcatttcaaagtttaatcatttttgatatctcaggtaacaatttaggtggttttctaccaaaagcctatttaagaaattatgaag 25523144  T
Q  223 ccatgatgaatgttact 239  Q
    |||||| ||||||||||    
T  25523145 ccatgaagaatgttact 25523161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 24141013 - 24140793
Alignment:
Q  18 ggcagcaacaaattagaaggcaattttcctcattggcttcaaacactgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcatta 117  Q
    |||| ||||||| |||||| ||||||| || ||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||| ||||||  ||| |    
T  24141013 ggcaacaacaaaatagaagacaatttttctgattggcttctaacactgcaatatttggaagtattggttttgcgagacaataagttacatggtcacatca 24140914  T
Q  118 ttaatccaaagatcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaattt 217  Q
      |||  ||||||  |||||  |||||||   |||| |  ||||||||||||  | || ||||| ||||||  ||| |||||||||||||| |||||||     
T  24140913 ccaatttaaagatgtagcatttatttccaaggttaa-tcattttgatatctctggaaacaacttcagtggttttctgccaaaagcctatttaaaaaatta 24140815  T
Q  218 tgaagccatgatgaatgttact 239  Q
    ||||||||||| | ||||||||    
T  24140814 tgaagccatgaaggatgttact 24140793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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