View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_68 (Length: 317)

Name: NF21242_high_68
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_68
NF21242_high_68
[»] chr7 (1 HSPs)
chr7 (17-305)||(48695841-48696129)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 48695841 - 48696129
Alignment:
Q  17 ctctctctctcactcacacacgggccatacaagtgcactctttgccatcaagcaagacatcatcttctctcaaggttttgcgtgcaaatagaaataatct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48695841 ctctctctctcactcacacacgggccatacaagtgcactctttgccatcaagcaagacatcatcttctctcaaggttttgcgtgcaaatagaaataatct 48695940  T
Q  117 ttcaaaacaagtggattcaagtttccgaatgatacccccaagcaaatcaaatctctcacaaaacaagtagtaactgttaagttaaacagtttagagtctt 216  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48695941 ttcaaaacaagtggattcaagtttccaaatgatacccccaagcaaatcaaatctctcacaaaacaagtagtaactgttacgttaaacagtttagagtctt 48696040  T
Q  217 tccattatgtgactgttgtgctgtgctgttaaagcaggtgattcaaactacataatcgtttacagaaattacatctccaccacaggttc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48696041 tccattatgtgactgttgtgctgtgctgttaaagcaggtgattcaaactacataatcgtttacagaaattacatctccaccacaggttc 48696129  T

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