View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_69 (Length: 315)

Name: NF21242_high_69
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_69
NF21242_high_69
[»] chr6 (27 HSPs)
chr6 (10-300)||(26812134-26812424)
chr6 (10-299)||(26724174-26724463)
chr6 (10-272)||(26618246-26618507)
chr6 (176-299)||(26636418-26636541)
chr6 (176-299)||(26742384-26742507)
chr6 (149-299)||(26849457-26849607)
chr6 (165-299)||(26975712-26975846)
chr6 (165-280)||(28140296-28140411)
chr6 (149-280)||(29843293-29843424)
chr6 (102-265)||(26937727-26937890)
chr6 (185-271)||(25074648-25074734)
chr6 (165-299)||(31289029-31289163)
chr6 (149-280)||(26959871-26960002)
chr6 (149-280)||(29826731-29826862)
chr6 (190-280)||(28097749-28097839)
chr6 (174-299)||(26950513-26950638)
chr6 (184-277)||(28297049-28297142)
chr6 (184-277)||(28514931-28515024)
chr6 (190-277)||(28227738-28227825)
chr6 (208-299)||(27664492-27664583)
chr6 (155-254)||(27705736-27705835)
chr6 (192-242)||(27697930-27697980)
chr6 (149-203)||(29845847-29845901)
chr6 (257-294)||(2185679-2185716)
chr6 (184-277)||(28235345-28235438)
chr6 (184-277)||(28243575-28243668)
chr6 (153-185)||(27576239-27576271)
[»] chr1 (4 HSPs)
chr1 (14-299)||(26136501-26136783)
chr1 (192-254)||(267672-267734)
chr1 (185-229)||(28127032-28127076)
chr1 (185-229)||(28163732-28163776)
[»] chr5 (1 HSPs)
chr5 (149-277)||(16691612-16691740)
[»] chr8 (1 HSPs)
chr8 (135-280)||(31905782-31905927)
[»] scaffold0038 (3 HSPs)
scaffold0038 (190-277)||(28236-28323)
scaffold0038 (184-277)||(35507-35600)
scaffold0038 (184-277)||(43737-43830)
[»] chr2 (2 HSPs)
chr2 (185-271)||(17992530-17992616)
chr2 (184-254)||(3280439-3280509)
[»] scaffold0237 (1 HSPs)
scaffold0237 (149-203)||(2052-2106)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 26812134 - 26812424
Alignment:
Q  10 cagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctgga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  26812134 cagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctattgtgggacttgagtctcgactgctgcatgtaatgtcacttctgga 26812233  T
Q  110 tgttggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgat 209  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||    
T  26812234 tgttgggtgtgatgatggagcatgtatgattgggatatgtggaagtggaggattgggtaaaacgacacttactcgtgcactttataatttgattgctgat 26812333  T
Q  210 caatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaactcctctccaaaa 300  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812334 caatttgatggtttgtgtttccttcacagtgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaactcctctccaaaa 26812424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 26724174 - 26724463
Alignment:
Q  10 cagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctgga 109  Q
    |||||||||  || ||||||||  |||||||||||||||||||||||||||  ||||| |||||||| ||||||||| | | ||||| ||| |||||||     
T  26724174 cagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcgactgctacgtgtaaagtcgcttctggt 26724273  T
Q  110 tgttggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgat 209  Q
    | ||| || | || |||| |  || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||    
T  26724274 ttttgtctataataatggtgtctgaatgattgggatatatggaagtggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgat 26724373  T
Q  210 caatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaactcctctccaaa 299  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  || | ||||||||||||    
T  26724374 caatttgaagggttgtgtttccttcacaatgtgagagaaaattcaattaaatatggcttagaatatctccaagagaagctcctctccaaa 26724463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 26618246 - 26618507
Alignment:
Q  10 cagagatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctgga 109  Q
    |||||||||  || ||||||||  |||||||||||||||||||||||||||  ||||| |||||||| ||||||||| | | ||||| ||| |||||||     
T  26618246 cagagatttggaacaagatcaattgtggtcttttagaagttgctgatcacctagttgttggacttgactctcgactgctacgtgtaaagtcgcttctggt 26618345  T
Q  110 tgttggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgat 209  Q
    | ||| || | || |||| |  || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||    
T  26618346 ttttgtctataataatggtgtctgaatgattgggatatatggaagtggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgat 26618445  T
Q  210 caatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaa 272  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  26618446 caatttgaagggttgtgtttccttcacaatgtgagag-aaattcaattaaatatggcttagaa 26618507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 26636418 - 26636541
Alignment:
Q  176 acttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacat 275  Q
    |||| ||| |||| |||||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||  ||    
T  26636418 acttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtat 26636517  T
Q  276 ctccagaagcaactcctctccaaa 299  Q
    |||||  ||||  |||||||||||    
T  26636518 ctccaagagcagatcctctccaaa 26636541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 26742384 - 26742507
Alignment:
Q  176 acttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacat 275  Q
    |||| ||| |||| |||||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||  ||    
T  26742384 acttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatggcttagagtat 26742483  T
Q  276 ctccagaagcaactcctctccaaa 299  Q
    |||||  ||||  |||||||||||    
T  26742484 ctccaagagcagatcctctccaaa 26742507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 26849457 - 26849607
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaa 248  Q
    ||||| ||||||| | || ||||| |||||| ||| |||| ||||||||| |||||| |||||||||||| ||  ||||||||||||| ||||| |||||    
T  26849457 tggaactggaggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaa 26849556  T
Q  249 aattcaattaaatatggcttagaacatctccagaagcaactcctctccaaa 299  Q
    |||||| ||||| ||||||||||   ||||||  |||| ||||||||||||    
T  26849557 aattcacttaaacatggcttagagtttctccaagagcagctcctctccaaa 26849607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 26975712 - 26975846
Alignment:
Q  165 ggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatg 264  Q
    ||||| || |||||| ||| |||| ||||||||||||||||  ||||||||||| ||   |||||||||||| ||||| ||||||||||| ||||| |||    
T  26975712 ggtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattcagttaaacatg 26975811  T
Q  265 gcttagaacatctccagaagcaactcctctccaaa 299  Q
    |||||||  |||||||  |||||||||||||||||    
T  26975812 gcttagagtatctccaagagcaactcctctccaaa 26975846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 28140296 - 28140411
Alignment:
Q  165 ggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatg 264  Q
    |||||||| |||||| | | |||| |||||||||| |||||||||||||||||| |||||||||| ||||| |||||| |||||| ||||  |||| |||    
T  28140296 ggtaaaacaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatg 28140395  T
Q  265 gcttagaacatctcca 280  Q
    |||||||| |||||||    
T  28140396 gcttagaagatctcca 28140411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 29843424 - 29843293
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaa 248  Q
    ||||| ||| ||||| |||||||| |||||| |||||||| |||||||||||||||| ||| |||||||| |||||||||| |||||| | | | |||||    
T  29843424 tggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaa 29843325  T
Q  249 aattcaattaaatatggcttagaacatctcca 280  Q
    | ||||  |||| |||||||||| ||||||||    
T  29843324 agttcagctaaacatggcttagagcatctcca 29843293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 26937727 - 26937890
Alignment:
Q  102 cttctggatgttggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttga 201  Q
    |||||| || |||| | |||||||||||  |||||| | ||||| | ||| | ||| ||| | |||||| | |||||| | |||||| ||||||||||||    
T  26937727 cttctgaatattggatatgatgatggagtatgtatggtagggatctatgggattggcggaattggtaaatcaacacttgcacgagcaatttataatttga 26937826  T
Q  202 ttgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatgg 265  Q
    |||  |||||||||||| |||||||||| ||||| ||||| ||||||||| ||| |||| ||||    
T  26937827 ttggtgatcaatttgaaagtttgtgttttcttcataatgtacgagaaaatgcaactaaacatgg 26937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 25074648 - 25074734
Alignment:
Q  185 agcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttaga 271  Q
    |||| ||||||||||||||||  ||||||||||| ||  ||||||||||||||||||| ||||||||||| || || ||||||||||    
T  25074648 agcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttcaacatggcttaga 25074734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 31289029 - 31289163
Alignment:
Q  165 ggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatg 264  Q
    |||||||| |||||| ||| |||| ||||||||| ||||   |||||||||||| ||  |||||||||||||| |||| |||||||| |  ||||| |||    
T  31289029 ggtaaaacaacactttctcaagcaatttataattcgattattgatcaatttgaatgtaagtgtttccttcacattgtgagagaaaatgctgttaaacatg 31289128  T
Q  265 gcttagaacatctccagaagcaactcctctccaaa 299  Q
    |||||||  |||||||  |||| ||||||||||||    
T  31289129 gcttagagtatctccaagagcagctcctctccaaa 31289163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 26959871 - 26960002
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaa 248  Q
    ||||| ||||||| | || || || |||||| ||| |||| ||||||||| |||||   |||||||||||  |  ||||||||||||||||||| |||||    
T  26959871 tggaactggaggaatgggaaagacaacactttctcaagcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaa 26959970  T
Q  249 aattcaattaaatatggcttagaacatctcca 280  Q
    |||||| ||||| ||||||||||  |||||||    
T  26959971 aattcagttaaacatggcttagagtatctcca 26960002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 29826731 - 29826862
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaa 248  Q
    ||||| ||| ||||| |||||||| |||||| |||||||| |||||||| ||||||  ||| |||||||| | |||||||| |||||  |  || |||||    
T  29826731 tggaattggcggattgggtaaaacaacacttgctcgagcaatttataatatgattggtgataaatttgaatgcttgtgttttcttcatgacttgagagaa 29826830  T
Q  249 aattcaattaaatatggcttagaacatctcca 280  Q
    | ||||  |||| |||||||||||||||||||    
T  29826831 agttcagctaaacatggcttagaacatctcca 29826862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 28097839 - 28097749
Alignment:
Q  190 tttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatctcca 280  Q
    |||||||||| ||||| | |||||||||| || | |||||||||||||||||| |||||||||||   ||| |||||||||| ||||||||    
T  28097839 tttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatggcttagagcatctcca 28097749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 26950513 - 26950638
Alignment:
Q  174 acacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaac 273  Q
    |||||| ||| |||| ||||||| ||||||||  ||||||||||| |    ||||| |||||||||||| ||||||||||| | ||| ||||||||||      
T  26950513 acacttgctcaagcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattcagtaaaacatggcttagagt 26950612  T
Q  274 atctccagaagcaactcctctccaaa 299  Q
    |||||||  |||| ||||||||||||    
T  26950613 atctccaagagcagctcctctccaaa 26950638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 28297142 - 28297049
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || |||||||||||||| ||||||||||| |||||||||||  | |||||||||  ||||||||| ||||| |||||    
T  28297142 gagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcatct 28297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 28514931 - 28515024
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || |||||||||||||| ||||||||||| |||||||||||  | |||||||||  ||||||||| ||||| |||||    
T  28514931 gagcagtttataattccatagccgatcaatttgatggtttgtgttttcttcacaatgtaagggaaaattcagctaaatatggtttagagcatct 28515024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 277
Target Start/End: Original strand, 28227738 - 28227825
Alignment:
Q  190 tttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    |||||||||| || |||||||||||||| ||||||||||| |||||| ||||  | |||||||||  ||||||||| ||||| |||||    
T  28227738 tttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatct 28227825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 27664583 - 27664492
Alignment:
Q  208 atcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaactcctctccaaa 299  Q
    ||||||||||| ||  |||||||||| |||||||  ||||||||||| ||||| || ||||| |  |||||||  |||| ||||||||||||    
T  27664583 atcaatttgaatgtaggtgtttcctttacaatgttagagaaaattcatttaaacatagcttaaagtatctccaagagcagctcctctccaaa 27664492  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 254
Target Start/End: Complemental strand, 27705835 - 27705736
Alignment:
Q  155 tggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattca 254  Q
    |||||| || |||||| | |||||| |  ||||| ||||||||||  |||| ||||||||||||||||| ||||| |||||  ||||| |||| ||||||    
T  27705835 tggaggcttgggtaaatcaacacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgtgagagagaattca 27705736  T

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Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 27697980 - 27697930
Alignment:
Q  192 tataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtg 242  Q
    ||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||    
T  27697980 tataatttggttgctgatcaatttgaaggtttatgttttcttcataatgtg 27697930  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 29845901 - 29845847
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgatt 203  Q
    ||||| ||| ||||| |||||||| |||||| |||||||| ||||||||||||||    
T  29845901 tggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgatt 29845847  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 2185679 - 2185716
Alignment:
Q  257 taaatatggcttagaacatctccagaagcaactcctct 294  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  2185679 taaatatggcttagtacatctccaggagcaactcctct 2185716  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 28235345 - 28235438
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || || ||||||||||| ||||||||||| |||||| | ||  | |||||||||  ||||||||| ||||| |||||    
T  28235345 gagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcatct 28235438  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 28243575 - 28243668
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || || |||||||||||  |||| ||||| |||||| ||||  | |||||||||| ||||||||| ||||| |||||    
T  28243575 gagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttagagcatct 28243668  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 27576271 - 27576239
Alignment:
Q  153 agtggaggattaggtaaaacgacacttactcga 185  Q
    ||||||||||| |||||||||||||||||||||    
T  27576271 agtggaggattgggtaaaacgacacttactcga 27576239  T

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Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 26136501 - 26136783
Alignment:
Q  14 gatttccaaaaagatcaaccgtggtcttttagaagttgctgatcaccctgttgtgggacttgagtctcgactgttgcatgtaatgtcacttctggatgtt 113  Q
    |||||| || ||||||||||||| ||||||| | ||||| |||||||| |||| |   || |||||||||||| |||| |||| ||||||||| ||||||    
T  26136501 gatttcaaacaagatcaaccgtgttcttttacatgttgccgatcaccccgttggg---ctcgagtctcgactgctgcaagtaaagtcacttctagatgtt 26136597  T
Q  114 ggctgtgatgatggagcttgtatgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaat 213  Q
    | ||||||| ||||||   || |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  26136598 gactgtgataatggagtcggtctgattgggatatatggaagtggaggattaggtaaaacaacacttactcgagcagtttataatttgattgcggatcaat 26136697  T
Q  214 ttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatctccagaagcaactcctctccaaa 299  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||| ||||||||||||    
T  26136698 ttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatggcttagaatatctccaagagcagctcctctccaaa 26136783  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 267734 - 267672
Alignment:
Q  192 tataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattca 254  Q
    |||||||| ||||| |||||||||||||| || ||||| |||||  ||||| |||||||||||    
T  267734 tataattttattgctgatcaatttgaaggattatgttttcttcatgatgtgagagaaaattca 267672  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 28127076 - 28127032
Alignment:
Q  185 agcactttataatttgattgccgatcaatttgaaggtttgtgttt 229  Q
    |||| |||||||||| ||||| ||||||||||||||||| |||||    
T  28127076 agcaatttataatttcattgctgatcaatttgaaggtttatgttt 28127032  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 28163776 - 28163732
Alignment:
Q  185 agcactttataatttgattgccgatcaatttgaaggtttgtgttt 229  Q
    |||| |||||||||| ||||| ||||||||||||||||| |||||    
T  28163776 agcaatttataatttcattgctgatcaatttgaaggtttatgttt 28163732  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 277
Target Start/End: Original strand, 16691612 - 16691740
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaa 248  Q
    ||||| ||||||| | |||||||| |||||| |||||||| |||||||||||||||| |||||||||||| |||||||||| |||||  | ||| |||||    
T  16691612 tggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaa 16691711  T
Q  249 aattcaattaaatatggcttagaacatct 277  Q
    ||||||  |||| ||||||||||||||||    
T  16691712 aattcatctaaacatggcttagaacatct 16691740  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 280
Target Start/End: Original strand, 31905782 - 31905927
Alignment:
Q  135 atgattgggatatgtggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttc 234  Q
    |||||||||||   ||||||||||||  |||||||||| |||||| |||  ||  |||||||| ||||||||||||| ||||||| ||||||||| |||     
T  31905782 atgattgggatccatggaagtggagggataggtaaaacaacacttgctctggctgtttataatctgattgccgatcactttgaagctttgtgttttcttg 31905881  T
Q  235 acaatgtgcgagaaaattcaattaaatatggcttagaacatctcca 280  Q
    | |||||| |||||||||||| |||| | || ||| ||||||||||    
T  31905882 aaaatgtgagagaaaattcaaataaacacgggttacaacatctcca 31905927  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 277
Target Start/End: Original strand, 28236 - 28323
Alignment:
Q  190 tttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    |||||||||| || |||||||||||||| ||||||||||| |||||| ||||  | |||||||||  ||||||||| ||||| |||||    
T  28236 tttataattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatct 28323  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 35507 - 35600
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || || ||||||||||| ||||||||||| |||||| | ||  | |||||||||  ||||||||| ||||| |||||    
T  35507 gagcagtttataattccatagctgatcaatttgatggtttgtgttttcttcacgacgtaagggaaaattcatctaaatatggtttagagcatct 35600  T

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Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 43737 - 43830
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttagaacatct 277  Q
    ||||| |||||||||  || || |||||||||||  |||| ||||| |||||| ||||  | |||||||||| ||||||||| ||||| |||||    
T  43737 gagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaattcaactaaatatggtttagagcatct 43830  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 17992616 - 17992530
Alignment:
Q  185 agcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattcaattaaatatggcttaga 271  Q
    |||| ||||||||||| ||||  |||||||| || ||  ||||||||||||||||||| ||||||||||| | ||| ||||||||||    
T  17992616 agcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtcaaacatggcttaga 17992530  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 3280439 - 3280509
Alignment:
Q  184 gagcactttataatttgattgccgatcaatttgaaggtttgtgtttccttcacaatgtgcgagaaaattca 254  Q
    ||||| |||||||||| |||||  ||||||||||| || | ||||| |||||||||||| |||||||||||    
T  3280439 gagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca 3280509  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 2106 - 2052
Alignment:
Q  149 tggaagtggaggattaggtaaaacgacacttactcgagcactttataatttgatt 203  Q
    ||||| ||| ||||| |||||||| |||||| |||||||| ||||||||||||||    
T  2106 tggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgatt 2052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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