View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_70 (Length: 312)
Name: NF21242_high_70
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_70 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 23916338 - 23916626
Alignment:
| Q |
24 |
tccctaattaatttcaaaacagcatccctgggactattcaacacaactgtctcatcaagtaaatttttaagccgacaaacagaattcaccaaaagaagtt |
123 |
Q |
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| T |
23916338 |
tccctaattaatttcaaaacagcatccctgggactattcaacacaactgtctcatcaagtaaatttttaagccgacaaacagaattcaccacaagaagtt |
23916437 |
T |
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| Q |
124 |
catctttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaataccttgc |
223 |
Q |
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| T |
23916438 |
catttttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaataccttgc |
23916537 |
T |
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| Q |
224 |
caggcgaagccctgtctcctggactctctctgcaggcctgaagccaagttgggggagttctatccctgttaagcgcagcttaggaggcc |
312 |
Q |
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| T |
23916538 |
caggcgaagtcctgtctcctggactctctctgcaggcctgaagccaggttgggggagttctatccctgtcaagcgcagcttaggaggcc |
23916626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 41583663 - 41583568
Alignment:
| Q |
128 |
tttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaataccttgc |
223 |
Q |
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| T |
41583663 |
tttccttatcttaaaatcttcaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgc |
41583568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 41571251 - 41571157
Alignment:
| Q |
123 |
tcatctttctttatcttcaagtcctcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaata |
217 |
Q |
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| T |
41571251 |
tcatttttccttatcttaaaatcctcaactttgatactttcccaatttttcgcaataccattgaactcaaaaggaacaccgaaacgttcgcaata |
41571157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 41557515 - 41557439
Alignment:
| Q |
147 |
tcaactttgatggtttcccatttctgtgcaatagcattgaactcaaacggaacattaaaacgttcacaataccttgc |
223 |
Q |
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| T |
41557515 |
tcaactttgatactttcccaattttttgcaataccattgtactcaaaaggaacattgaaacgtttgcaataacttgc |
41557439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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