View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_73 (Length: 304)

Name: NF21242_high_73
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_73
NF21242_high_73
[»] chr2 (1 HSPs)
chr2 (23-287)||(30732741-30733005)
[»] chr1 (6 HSPs)
chr1 (23-287)||(14668194-14668458)
chr1 (24-209)||(14707432-14707617)
chr1 (160-264)||(14665240-14665343)
chr1 (158-270)||(14702757-14702869)
chr1 (236-287)||(14707382-14707433)
chr1 (193-270)||(14715443-14715520)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 30733005 - 30732741
Alignment:
Q  23 atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30733005 atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa 30732906  T
Q  123 cccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggataatatcacttagatccgacaccccta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30732905 cccttttgacttgtctcctaataaactcatctttaatttttacaacggataagattatctctacggtctcggataataccacttagatccgacaccccta 30732806  T
Q  223 gacttttactgtggaatttatcaaccacgcactttgaatccaattcaactcaagccgcaattcgt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732805 gacttttactgtggaatttatcaaccacgcactttgaatccaattcaactcaagccgcaattcgt 30732741  T

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Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 14668194 - 14668458
Alignment:
Q  23 atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14668194 atgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgcccttgctaacacttatgagcaa 14668293  T
Q  123 cccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggataatatcacttagatccgacaccccta 222  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14668294 cccttttgacttgtatcctaataaactcatctttaatttttacaacggacaagaatatctctacggtctcggataatatcacttagatccgacaccccta 14668393  T
Q  223 gacttttactgtggaatttatcaaccacgcactttgaatccaattcaactcaagccgcaattcgt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14668394 gacttttactgtggaatttatcaaccacgcactttgaatccaattgaactcaagccgcaattcgt 14668458  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 14707617 - 14707432
Alignment:
Q  24 tgataaaaagcttatagcatttcatcaattagaatatgatgaatacaagcaggatcaatggaaatgtggaaggccgtccttgctaacacttatgagcaac 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  14707617 tgataaaaagcttatagcatttcattaattagaatatgatgaatacaagtaggatcgatggaaatgtggaaggccgcccttgctaacacttatgagcaac 14707518  T
Q  124 ccttttgacttgtctcctaataaactcatctttaatttttacaacggacaagattatctctacggtctcggataatatcacttaga 209  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14707517 ccttttgacttgtctcctaataaactcaatcttaatttttacaacggacaagattatctctacggtctcggataatatcacttaga 14707432  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 14665240 - 14665343
Alignment:
Q  160 ttttacaacggacaagattatctctacggtctcggataatatcacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttga 259  Q
    ||||||||||||||||||||| ||| ||| ||||| ||| |||||| |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  14665240 ttttacaacggacaagattatatcttcgggctcgg-taacatcactaagatccgacacctctagactcttactgtggaattgatcaaccacgcactttga 14665338  T
Q  260 atcca 264  Q
    |||||    
T  14665339 atcca 14665343  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 14702869 - 14702757
Alignment:
Q  158 atttttacaacggacaagattatctctacggtctcggataatatcacttagatccgacacccctagacttttactgtggaatttatcaaccacgcacttt 257  Q
    ||||||||||||||| ||||||| ||  | |||| |||||||||||||  ||||||||||||||||||| |||||||||| |||||||||| | ||||||    
T  14702869 atttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagactcttactgtggagtttatcaaccgcacacttt 14702770  T
Q  258 gaatccaattcaa 270  Q
    |||||||||||||    
T  14702769 gaatccaattcaa 14702757  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 14707433 - 14707382
Alignment:
Q  236 gaatttatcaaccacgcactttgaatccaattcaactcaagccgcaattcgt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14707433 gaatttatcaaccacgcactttgaatccaattcaactcaagccgcaattcgt 14707382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 14715520 - 14715443
Alignment:
Q  193 ggataatatcacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttgaatccaattcaa 270  Q
    ||||||| | ||| ||||| |||| |||||||| |||| |||||||||||||||| || |||||||||||||||||||    
T  14715520 ggataatgtaactaagatcggacaaccctagacgtttattgtggaatttatcaactacacactttgaatccaattcaa 14715443  T

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