View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_77 (Length: 300)
Name: NF21242_high_77
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_77 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 13122 - 12851
Alignment:
| Q |
13 |
cagacacaagccttgtcctataaagaagttagtcacccatcccacaaaatcttaaccactccatctaagaaccaatcaacactagcatcaaccccaactc |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13122 |
cagacacaagccttgtcccataaagaagttagtcacccatcccacaaaatcttaaccactccatctaagaaccaatcaacactagcatcaaccccaactc |
13023 |
T |
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| Q |
113 |
ctacaagagagacatcattccatcctggaaatgcagtagacaaactaccacatctccctcccatggtggacaatacataattaacatcatacctagtaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022 |
ctacaagagagacatcattccatcctggaaatgcagtagacaaactaccacatctccctcccatggtggacaatacataattaacatcatacctagtaga |
12923 |
T |
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| Q |
213 |
gataatatctcttgaaataaatattcctctagtagggagtctccgccgaacattcccatcatagcttgattc |
284 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12922 |
gataatatctcttgaaagaaatattcctctagtaaggagtctccgccgaacattcccatcatagcttgattc |
12851 |
T |
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