View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_78 (Length: 295)

Name: NF21242_high_78
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_78
NF21242_high_78
[»] chr3 (18 HSPs)
chr3 (74-277)||(8082342-8082549)
chr3 (69-278)||(30801002-30801215)
chr3 (74-286)||(45572660-45572876)
chr3 (75-281)||(11685738-11685948)
chr3 (74-278)||(24373072-24373279)
chr3 (68-281)||(18996570-18996786)
chr3 (68-281)||(18999109-18999325)
chr3 (68-281)||(28246860-28247077)
chr3 (74-277)||(41957979-41958187)
chr3 (68-278)||(37609092-37609307)
chr3 (77-281)||(53151529-53151739)
chr3 (63-278)||(13696656-13696883)
chr3 (74-214)||(30260656-30260796)
chr3 (110-281)||(3777296-3777471)
chr3 (68-213)||(20307316-20307461)
chr3 (169-214)||(30260816-30260861)
chr3 (92-278)||(54162833-54163030)
chr3 (235-281)||(20307463-20307509)
[»] chr8 (15 HSPs)
chr8 (68-278)||(38567513-38567727)
chr8 (69-278)||(2734847-2735061)
chr8 (74-278)||(35563729-35563936)
chr8 (74-281)||(38526487-38526696)
chr8 (68-281)||(18916137-18916357)
chr8 (74-281)||(41486472-41486683)
chr8 (74-214)||(9686368-9686508)
chr8 (68-281)||(1197544-1197764)
chr8 (68-214)||(11661333-11661479)
chr8 (74-278)||(24697549-24697756)
chr8 (74-154)||(1996320-1996400)
chr8 (169-281)||(2001406-2001521)
chr8 (77-139)||(43596095-43596157)
chr8 (223-281)||(43596252-43596310)
chr8 (169-214)||(43596192-43596237)
[»] chr7 (15 HSPs)
chr7 (74-278)||(31293026-31293234)
chr7 (74-281)||(20372433-20372647)
chr7 (74-278)||(30586064-30586271)
chr7 (77-281)||(47266253-47266463)
chr7 (75-265)||(41743126-41743319)
chr7 (74-278)||(49141941-49142151)
chr7 (101-281)||(44079868-44080051)
chr7 (83-214)||(31577403-31577533)
chr7 (74-161)||(32031364-32031451)
chr7 (74-281)||(22916672-22916883)
chr7 (74-148)||(27620193-27620267)
chr7 (68-214)||(8048232-8048370)
chr7 (223-278)||(31577554-31577609)
chr7 (223-265)||(43174979-43175021)
chr7 (223-278)||(27620063-27620118)
[»] chr6 (3 HSPs)
chr6 (68-278)||(4653572-4653785)
chr6 (75-262)||(33756400-33756588)
chr6 (74-278)||(24765199-24765413)
[»] chr4 (17 HSPs)
chr4 (69-278)||(24072387-24072601)
chr4 (76-278)||(26695830-26696037)
chr4 (68-281)||(56080596-56080812)
chr4 (74-281)||(40591054-40591264)
chr4 (63-281)||(39502582-39502805)
chr4 (69-277)||(9033957-9034170)
chr4 (68-279)||(29051953-29052171)
chr4 (63-277)||(39499243-39499462)
chr4 (74-214)||(2623310-2623450)
chr4 (74-277)||(44506120-44506326)
chr4 (76-278)||(127938-128142)
chr4 (76-281)||(37995456-37995664)
chr4 (74-214)||(45620393-45620532)
chr4 (68-148)||(51790244-51790324)
chr4 (76-281)||(31335047-31335261)
chr4 (94-142)||(54230752-54230800)
chr4 (169-214)||(4238558-4238603)
[»] chr2 (5 HSPs)
chr2 (67-281)||(30518445-30518665)
chr2 (67-277)||(15805752-15805965)
chr2 (68-281)||(5614531-5614748)
chr2 (66-281)||(32597348-32597569)
chr2 (74-281)||(27641025-27641239)
[»] chr5 (11 HSPs)
chr5 (74-277)||(25897917-25898125)
chr5 (74-277)||(22213269-22213476)
chr5 (75-278)||(30493876-30494084)
chr5 (75-278)||(30534219-30534427)
chr5 (68-265)||(36275532-36275734)
chr5 (74-281)||(42394022-42394239)
chr5 (74-278)||(26674060-26674266)
chr5 (74-278)||(26945665-26945872)
chr5 (68-214)||(11740531-11740677)
chr5 (74-281)||(13946370-13946576)
chr5 (169-212)||(28611718-28611761)
[»] chr1 (18 HSPs)
chr1 (74-277)||(45360175-45360382)
chr1 (74-265)||(32550356-32550549)
chr1 (74-281)||(5555198-5555408)
chr1 (75-276)||(43069011-43069215)
chr1 (74-281)||(19565168-19565380)
chr1 (74-278)||(14236401-14236603)
chr1 (90-281)||(40125432-40125627)
chr1 (91-278)||(21620060-21620252)
chr1 (74-278)||(3656526-3656727)
chr1 (77-278)||(4643592-4643797)
chr1 (74-214)||(6694056-6694199)
chr1 (77-214)||(3027730-3027868)
chr1 (9-71)||(29381388-29381450)
chr1 (89-161)||(25304381-25304453)
chr1 (68-137)||(16296884-16296953)
chr1 (92-142)||(35371964-35372014)
chr1 (169-214)||(2782446-2782491)
chr1 (169-214)||(35371889-35371934)
[»] scaffold0051 (1 HSPs)
scaffold0051 (69-278)||(59014-59229)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 74 - 277
Target Start/End: Complemental strand, 8082549 - 8082342
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  8082549 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 8082450  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| |||    
T  8082449 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttaca 8082350  T
Q  270 tgggaata 277  Q
    ||||||||    
T  8082349 tgggaata 8082342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 69 - 278
Target Start/End: Complemental strand, 30801215 - 30801002
Alignment:
Q  69 taggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnn 168  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||           
T  30801215 tagggggcgtttgtttttgggaaacacaaattattctcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaa 30801116  T
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||| ||||||||||||    
T  30801115 gtgtttggcaaataacttgacattcctggaaaaattggaagttacattttttttttttaaatctatgcataatatcatgggaatgcatattcccatctct 30801016  T
Q  265 tcacatgggaataa 278  Q
    | |||||| |||||    
T  30801015 ttacatggaaataa 30801002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 286
Target Start/End: Original strand, 45572660 - 45572876
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  45572660 ggcgtttgtttttgggaaacataaattattctcgggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 45572759  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| |||    
T  45572760 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttaca 45572859  T
Q  270 tgggaataaattgatga 286  Q
    |||||||| ||| ||||    
T  45572860 tgggaatatattcatga 45572876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 75 - 281
Target Start/End: Complemental strand, 11685948 - 11685738
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||       ||||||    
T  11685948 gcgtttgtttttgggaaacacaaattattcataggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgttt 11685849  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||||||||||||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11685848 ggcaaataacttgacattcctgtaaaaattggaagttacaattttttttttaaaatctatgcataatatcatgggaatgcacattcccatctctttacat 11685749  T
Q  271 gggaataaatt 281  Q
    |||||||||||    
T  11685748 gggaataaatt 11685738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 24373072 - 24373279
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||       |||||    
T  24373072 ggcgtttgtttttgggaaacacaaattattcccaggaataacatatc-gggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 24373170  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| |||||||| |||    
T  24373171 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattctcatctctttaca 24373270  T
Q  270 tgggaataa 278  Q
    |||||||||    
T  24373271 tgggaataa 24373279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 68 - 281
Target Start/End: Original strand, 18996570 - 18996786
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||          
T  18996570 ttagggggcgtttgtttttgggaaacacaaattattcctaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 18996669  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
     |||||||| |||||||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||| ||||| ||    
T  18996670 agtgtttggtaaataacttgacattcctggaaaaattggaagttacaattttttttaaaaatttatgcataatatcatgggaatgcacatttccatccct 18996769  T
Q  265 tcacatgggaataaatt 281  Q
    | |||||||||||||||    
T  18996770 ttacatgggaataaatt 18996786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 68 - 281
Target Start/End: Original strand, 18999109 - 18999325
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||          
T  18999109 ttagggggcgtttgtttttgggaaacacaaattattcctaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 18999208  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
     |||||||| |||||||||||||||||||||||||||||||||||||           |||| |||||||||||||||||||||||||||| ||||| ||    
T  18999209 agtgtttggtaaataacttgacattcctggaaaaattggaagttacaattttttttaaaaatttatgcataatatcatgggaatgcacatttccatccct 18999308  T
Q  265 tcacatgggaataaatt 281  Q
    | |||||||||||||||    
T  18999309 ttacatgggaataaatt 18999325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 68 - 281
Target Start/End: Complemental strand, 28247077 - 28246860
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          
T  28247077 ttagggggcgtttgtttttgggaaatacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 28246978  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
     ||||||| ||||||||||||||||| ||||||||||||||||||||            |||||||||||||||||||||||||||||||||| ||| ||    
T  28246977 agtgtttgtcaaataacttgacattcgtggaaaaattggaagttacaatttttttttaaaaatctatgcataatatcatgggaatgcacattctcatatc 28246878  T
Q  264 ttcacatgggaataaatt 281  Q
    || | |||||||||||||    
T  28246877 tttatatgggaataaatt 28246860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 41957979 - 41958187
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  41957979 ggcgtttgtttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 41958078  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttac-----annnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||| ||    
T  41958079 tggcaaataacttgacattcctgaaaaaattggaagttacgattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttac 41958178  T
Q  269 atgggaata 277  Q
    |||||||||    
T  41958179 atgggaata 41958187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 37609307 - 37609092
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||          
T  37609307 ttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggagtgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 37609208  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatct 262  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||||||||||||||  |||| |||||| |||||    
T  37609207 agtgtttggcaaataacttgacattcctagaaaaattggaagttacaattttttttttaaaaatctatgcataatatcatgataatgtacattctcatct 37609108  T
Q  263 cttcacatgggaataa 278  Q
    ||| ||||||||||||    
T  37609107 ctttacatgggaataa 37609092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 53151739 - 53151529
Alignment:
Q  77 gtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttgg 176  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||        |||||||    
T  53151739 gtttgtttttgggaaacaca--ttattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgtttgg 53151642  T
Q  177 caaataacttgacattcctggaaaaattggaagttaca--------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcac 268  Q
    ||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||| |||||||| ||    
T  53151641 caaataacttgacattcctggaaaaattggaagttacattttttttttttttttaaatctatgcataatatcatgggaatgcacattctcatctctttac 53151542  T
Q  269 atgggaataaatt 281  Q
    |||||||||||||    
T  53151541 atgggaataaatt 53151529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 278
Target Start/End: Complemental strand, 13696883 - 13696656
Alignment:
Q  63 aaaaattaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttn 162  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | | |||||||||     
T  13696883 aaaatttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattattgagtatttgtta 13696784  T
Q  163 nnnnnngtgtttggcaaataacttgacattcctggaaaaattggaagttaca------------nnnnnnnnaaatctatgcataatatcatgggaatgc 250  Q
          |||||||||||||||||||||||||||| |||||||||||||||||                    ||||||||||||||||||||||||||||    
T  13696783 aaaaaagtgtttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttttttttttttaaatctatgcataatatcatgggaatgc 13696684  T
Q  251 acattcccatctcttcacatgggaataa 278  Q
    ||||||||||||||| ||||||||||||    
T  13696683 acattcccatctctttacatgggaataa 13696656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 30260656 - 30260796
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||  | ||||||||||  |||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  30260656 ggcgtttgtttttgggaaacacaaattattttctggaataacatttccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 30260755  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30260756 tggcaaataacttgacattcctggaaaaattggaagttaca 30260796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 3777296 - 3777471
Alignment:
Q  110 aataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttggcaaataacttgacattcctggaaaaattggaag 209  Q
    ||||||||| ||| |||||||||||||||||||| ||||| |||||||||||       |||||||||| ||||||||||||||||||||||||||||||    
T  3777296 aataacatatccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcagataacttgacattcctggaaaaattggaag 3777395  T
Q  210 ttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataaatt 281  Q
    |||||            ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  3777396 ttacaattttttttttaaaatctatgcataatatcatgggaatgcacatttccatctctttacatgggaataaatt 3777471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 20307316 - 20307461
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||||| ||| |||||||| ||| ||||||| ||| | |||||||||||          
T  20307316 ttaggaggcgtttgttttggagaaacacaaattattttcaggaataacatatccgagaatgaaattataaaaatttgattattgggtatttgttaaaata 20307415  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttac 213  Q
     |||||||||||||||||| |||||| |||||||| ||||||||||    
T  20307416 agtgtttggcaaataacttaacattcttggaaaaactggaagttac 20307461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 30260816 - 30260861
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30260816 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 30260861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 278
Target Start/End: Complemental strand, 54163030 - 54162833
Alignment:
Q  92 acacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttggcaaataacttgacat 191  Q
    |||||| |||| |||||||||||| || |||||||| ||||||||||||||| ||||   ||||||| ||       ||||||||| ||||| |||||||    
T  54163030 acacaagttatacccaggaataacttatccgggaataaaaatatgaaaatttgattcctaggtattttttaataaaagtgtttggcgaataagttgacat 54162931  T
Q  192 tcctggaaaaattggaagttacannnnnnnnaaa-----------tctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataa 278  Q
    |||||| |||||| |||||||||        |||           |||||| |  || |||||||||||||||||||||||| |||||||||||||||    
T  54162930 tcctgggaaaattagaagttacaaatttaaaaaaaaaaaaaaaaatctatgtaggatttcatgggaatgcacattcccatcttttcacatgggaataa 54162833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 20307463 - 20307509
Alignment:
Q  235 aatatcatgggaatgcacattcccatctcttcacatgggaataaatt 281  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||||    
T  20307463 aatattatgggaatgcacattctcatctctttacatgagaataaatt 20307509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 68 - 278
Target Start/End: Complemental strand, 38567727 - 38567513
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||          
T  38567727 ttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttcaaaaa 38567628  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||            |||||||||||||||||||||||||||||||| ||||||||    
T  38567627 agtgtttggcaaataacttgacattcttggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacatccccatctc 38567528  T
Q  264 ttcacatgggaataa 278  Q
    || ||||||||||||    
T  38567527 tttacatgggaataa 38567513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 2734847 - 2735061
Alignment:
Q  69 taggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnn 168  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||           
T  2734847 tagggggcgtttgtttttgggaaacacaaactattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaa 2734946  T
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  2734947 gtgtttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaaatctatgcataatatcatgggaatgcacattcccatctc 2735046  T
Q  264 ttcacatgggaataa 278  Q
    || ||||| ||||||    
T  2735047 tttacatgcgaataa 2735061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 35563936 - 35563729
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  35563936 ggcgtttgtttttgggaaacacaaattatttccgggaataacatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 35563837  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35563836 tggcaaataacttgacattcctggaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacat 35563737  T
Q  271 gggaataa 278  Q
    ||||||||    
T  35563736 gggaataa 35563729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 281
Target Start/End: Original strand, 38526487 - 38526696
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||       |||||    
T  38526487 ggcgtttgtttttgggaaacataaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgagtatttgttaaaaaaagtgtt 38526586  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca--nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatg 271  Q
    ||||||||||||||||||||||| |||||||||||||||||          |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  38526587 tggcaaataacttgacattcctgaaaaaattggaagttacaattttttttaaaatctatgcataatatcatgggaatgcacattctcatctctttacatg 38526686  T
Q  272 ggaataaatt 281  Q
     |||||||||    
T  38526687 agaataaatt 38526696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 68 - 281
Target Start/End: Complemental strand, 18916357 - 18916137
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||          
T  18916357 ttagggggcgtttgtttttgggaaacacaaattattccgaggaataacatacctgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 18916258  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttac-------annnnnnnnaaatctatgcataatatcatgggaatgcacattcccat 260  Q
     ||||||||||||||| |||||||||||||||||||||||||||||       |        ||||||||| ||||||||||||||||||||||||||||    
T  18916257 agtgtttggcaaataatttgacattcctggaaaaattggaagttacaatttttattttttttaaatctatgtataatatcatgggaatgcacattcccat 18916158  T
Q  261 ctcttcacatgggaataaatt 281  Q
    ||||| |||||||||||||||    
T  18916157 ctctttacatgggaataaatt 18916137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 74 - 281
Target Start/End: Original strand, 41486472 - 41486683
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| || ||||||||       |||||    
T  41486472 ggcgtttgtttttgggaaacacaaattattcccaggaataacatatccgggactgaaaatatgaaaatttgattcttggatatttgttaaaaaaagtgtt 41486571  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    ||||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||||||||||||||||||| |||| |||    
T  41486572 tggcaaataacttgacattcctggataaattggaagttacaattttttttttaaaatctatgcataatatcatgggaatgcacattcccatatctttaca 41486671  T
Q  270 tgggaataaatt 281  Q
    || |||||||||    
T  41486672 tgagaataaatt 41486683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 9686368 - 9686508
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  9686368 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 9686467  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  9686468 tgtcaaataacttgacattcctggaaaaattggaagttaca 9686508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 68 - 281
Target Start/End: Complemental strand, 1197764 - 1197544
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||  |||||||||||          
T  1197764 ttagggggcgtgtgtttttgggaaacacaaattattctcaggaataacatatccgggaatgaaaatatgaaaatttgattcctgggtatttgttaaaaaa 1197665  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca-------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccat 260  Q
     |||||||||||||||||||||||||| | |||||||||||||||||               ||||||||||||||||||||||||||||||||||||||    
T  1197664 agtgtttggcaaataacttgacattccagaaaaaattggaagttacaattttattttattttaaatctatgcataatatcatgggaatgcacattcccat 1197565  T
Q  261 ctcttcacatgggaataaatt 281  Q
    ||||| ||||| |||||||||    
T  1197564 ctctttacatgagaataaatt 1197544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 11661479 - 11661333
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||   |||||||||          
T  11661479 ttagggggcgtttgtttttgggaaacacaaattattcccaagaataagatactcgggaatgaaaatatgaaaatttgattcttaagtatttgttaaaaaa 11661380  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
     ||||||||||||||||||||||||| || |||||||||||||||||    
T  11661379 agtgtttggcaaataacttgacattcttgaaaaaattggaagttaca 11661333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 24697549 - 24697756
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgtt------nnnnnn 167  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||||||||||||||||| ||||  |||||||||||                
T  24697549 ggcgtttgttttggggaaacataaattattcctaggaataacatacatgggaatgaaaatatgaaaatttgattcatgggtatttgttaaaaaaaaaaaa 24697648  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttacannnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttca 267  Q
     |||||||| |||||||||||||||||||| |||||||||||||| |         |||||||||| |||||||||||||||||||||| |||||||| |    
T  24697649 agtgtttggaaaataacttgacattcctgggaaaattggaagttataattttt---aatctatgcagaatatcatgggaatgcacattcacatctcttta 24697745  T
Q  268 catgggaataa 278  Q
    |||||||||||    
T  24697746 catgggaataa 24697756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 1996320 - 1996400
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggt 154  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||| ||||    
T  1996320 ggcgtttgtttttgggaaacacaaattattctcaggaataacatatccgggaacgaaaatatgaaaatttgattcttgggt 1996400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 2001406 - 2001521
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttacannnnnnnn---aaatctatgcataatatcatgggaatgcacattcccatctctt 265  Q
    |||||||| |||||||||||||||| | ||||||||| ||||||||           ||||||||||||||||||||| |||||||||||| ||| ||||    
T  2001406 gtgtttggtaaataacttgacattcttagaaaaattgaaagttacaaattttttttaaaatctatgcataatatcatgagaatgcacattctcatatctt 2001505  T
Q  266 cacatgggaataaatt 281  Q
      ||||||||||||||    
T  2001506 ttcatgggaataaatt 2001521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 43596095 - 43596157
Alignment:
Q  77 gtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaa 139  Q
    ||||||||| |||||||||||||||||| ||| || |||||| |||  |||||||||||||||    
T  43596095 gtttgttttggggaaacacaaattattctcagaaaaaacatatccgaaaatgaaaatatgaaa 43596157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 43596252 - 43596310
Alignment:
Q  223 aaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataaatt 281  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||| ||| | |||||||||    
T  43596252 aaatctatgcagaatattacgggaatgcacattcccaactctttacacgagaataaatt 43596310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 43596192 - 43596237
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    ||||||| ||||||| |||||||||||| |||||||| ||||||||    
T  43596192 gtgtttgacaaataatttgacattcctgaaaaaattgaaagttaca 43596237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 31293026 - 31293234
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  31293026 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 31293125  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    ||||||||||||||||||||| | |||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| |||    
T  31293126 tggcaaataacttgacattcccgaaaaaattggaagttacaatttttttttaaaaatctatgcataatatcatgggaatgcacattcccatctctttaca 31293225  T
Q  270 tgggaataa 278  Q
    |||||||||    
T  31293226 tgggaataa 31293234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 20372647 - 20372433
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||       |||||    
T  20372647 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtgtt 20372548  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca-------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttc 266  Q
    |||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||     
T  20372547 tggcaaataacttgacattcctggaaaaattggaagttacaattttttttttttttaaatctatgcataatatcatgggaatgcacattcccatctcttt 20372448  T
Q  267 acatgggaataaatt 281  Q
    |||||||||||||||    
T  20372447 acatgggaataaatt 20372433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 30586064 - 30586271
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||       |||||    
T  30586064 ggcgtttgtttttgggaaacacaaattatttccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgagtatttgttaaaaaaagtgtt 30586163  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    ||||||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30586164 tggcaaataacttgacattcctgaaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattctcatctctttacat 30586263  T
Q  271 gggaataa 278  Q
    ||||||||    
T  30586264 gggaataa 30586271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 77 - 281
Target Start/End: Original strand, 47266253 - 47266463
Alignment:
Q  77 gtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttgg 176  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||       ||||||||    
T  47266253 gtttgtttttgggaaacacaaattattctcaggaataacatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttgg 47266352  T
Q  177 caaataacttgacattcctgg--aaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
     ||||||||||||||||||||  |||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47266353 aaaataacttgacattcctggaaaaaaattggaagttacaattttttttttaaaatctatgcataatatcatgggaatgcacattcccatctctttacat 47266452  T
Q  271 gggaataaatt 281  Q
    |||||||||||    
T  47266453 gggaataaatt 47266463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 75 - 265
Target Start/End: Original strand, 41743126 - 41743319
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||||       ||||||    
T  41743126 gcgtttgtttttgggaaacacaaattatttccaggaataacatacccggaaatgaaaatatgaaaatttgattcttggatatttgttaaaaaaagtgttt 41743225  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctctt 265  Q
    |||||||||||||||||||||| |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||    
T  41743226 ggcaaataacttgacattcctgaaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccatctctt 41743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 49142151 - 49141941
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  49142151 ggcgtttgtttttgggaaacactaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 49142052  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttca 267  Q
    ||||||||||||||||||||||| |||||||||||||||||              ||||||||||||||||||||||||||  ||||||||||||||| |    
T  49142051 tggcaaataacttgacattcctgaaaaaattggaagttacattttttttttttttaaatctatgcataatatcatgggaatatacattcccatctcttta 49141952  T
Q  268 catgggaataa 278  Q
    |||| ||||||    
T  49141951 catgagaataa 49141941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 44079868 - 44080051
Alignment:
Q  101 attcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttggcaaataacttgacattcctggaaa 200  Q
    |||| ||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||       ||||||| |||||||||||| ||| |||||||    
T  44079868 attctcaggaataacatacccgagaatgaaaatatgaaaatttgattcttaggtatttgttaaaaaaagtgtttgacaaataacttgatattactggaaa 44079967  T
Q  201 aattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataaatt 281  Q
    ||||||||||||||           |||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  44079968 aattggaagttacaattttttttttaaatctatgcgtaatatcatgggaatgcacattcccgtctctttacatggaaataaatt 44080051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 31577403 - 31577533
Alignment:
Q  83 ttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttggcaaata 182  Q
    ||||||| |||||||||||| | |||||||||||||| ||| ||||||||||| ||||||| ||||| |||||||||||       |||||| |||||||    
T  31577403 ttttggggaacacaaattat-ctcaggaataacatactcggaaatgaaaatataaaaatttgattcttgggtatttgttaaaaaaagtgtttagcaaata 31577501  T
Q  183 acttgacattcctggaaaaattggaagttaca 214  Q
    |||||||||||||||||| |||||||||||||    
T  31577502 acttgacattcctggaaatattggaagttaca 31577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 32031364 - 32031451
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgtt 161  Q
    |||||||||||||||||||||||||||||||  |||||||||||| | |||||||||||||||||||||| ||||| || ||||||||    
T  32031364 ggcgtttgtttttgggaaacacaaattattcttaggaataacatatctgggaatgaaaatatgaaaatttgattcttggatatttgtt 32031451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 22916883 - 22916672
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||| ||||||| || |||||||||||||||   ||||||| ||| | ||| |||||||||||||| ||| ||||  | |||||||||        ||||    
T  22916883 ggcgcttgttttgggaaaacacaaattattcattggaataatatatctggggatgaaaatatgaaattttgattcctgagtatttgttaaaaaaaatgtt 22916784  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttacannnnnnnn----aaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    | |||||||||||||||||| ||||||||||| ||||||||            ||||||||||| ||||||||||||||||||||||||| || || |||    
T  22916783 tagcaaataacttgacattcttggaaaaattgaaagttacaatttttttttttaaatctatgcagaatatcatgggaatgcacattcccaactttttaca 22916684  T
Q  270 tgggaataaatt 281  Q
    ||||||| ||||    
T  22916683 tgggaatcaatt 22916672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 27620267 - 27620193
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattc 148  Q
    |||||||||||| |||||||||||||||||| |||||||| |||| | || ||||||||||||||||||| ||||    
T  27620267 ggcgtttgttttagggaaacacaaattattcacaggaatagcatatctggaaatgaaaatatgaaaatttgattc 27620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 8048370 - 8048232
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||  | |||||||||||||||| | | |||||| || ||||||||||||||||||        |||   ||||||||||          
T  8048370 ttagggggcgtttgtttcggagaaacacaaattattctcggaaataacttatccgggaatgaaaatatga--------ttcctaggtatttgttaaaaaa 8048279  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
     | ||||||||||||| ||||||||||||| ||||||||||||||||    
T  8048278 agcgtttggcaaataaattgacattcctgggaaaattggaagttaca 8048232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 31577554 - 31577609
Alignment:
Q  223 aaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataa 278  Q
    |||| |||||||||||||||||||||||||||||||| |||||  | |||||||||    
T  31577554 aaatatatgcataatatcatgggaatgcacattcccacctcttttcttgggaataa 31577609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 43174979 - 43175021
Alignment:
Q  223 aaatctatgcataatatcatgggaatgcacattcccatctctt 265  Q
    ||||||||||| |||||||||| ||||||||||||||||||||    
T  43174979 aaatctatgcagaatatcatggaaatgcacattcccatctctt 43175021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 27620118 - 27620063
Alignment:
Q  223 aaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataa 278  Q
    ||||||||||| ||||| ||||||||||||||| ||| ||||| ||||| ||||||    
T  27620118 aaatctatgcagaatattatgggaatgcacatttccacctctttacatgagaataa 27620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 278
Target Start/End: Original strand, 4653572 - 4653785
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||          
T  4653572 ttagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttaggtatttgttaaaaaa 4653671  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
     |||||||||||||||||||||||||||| |||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||    
T  4653672 agtgtttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttaaaatctatgcataatatcatgggaatgcacattcccatctct 4653771  T
Q  265 tcacatgggaataa 278  Q
    | ||||||||||||    
T  4653772 ttacatgggaataa 4653785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 33756400 - 33756588
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||       || |||    
T  33756400 gcgtttgtttttgggaaacacaaattatttccaggaataacatatccgggaatgaaaatatgaaaatttgattctcgggtatttgttaaaaaaagtattt 33756499  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca-nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatct 262  Q
    |||||||||||||||||||||  |||||||||||||||||         |||| |||||||||||||||||||||||||||||||||||    
T  33756500 ggcaaataacttgacattcctaaaaaaattggaagttacatttttttttaaatatatgcataatatcatgggaatgcacattcccatct 33756588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 24765199 - 24765413
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtg-- 171  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||  || ||||||||       |||      
T  24765199 ggcgtttgttttggggaaacacaaattattcccaggaataatatactcgggaatgaaaatatgaaaatttgattcctggatatttgttaaaaaaagtgtt 24765298  T
Q  172 ---tttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
       |||||| ||||||||||||||| ||| ||||||| ||||||||             ||||||||||| |||||||||||||||||||||||||||||    
T  24765299 taatttggcgaataacttgacattcatgggaaaattgaaagttacagttttcttttttaaaatctatgcaaaatatcatgggaatgcacattcccatctc 24765398  T
Q  264 ttcacatgggaataa 278  Q
    || ||||||||||||    
T  24765399 tttacatgggaataa 24765413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 24072387 - 24072601
Alignment:
Q  69 taggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnn 168  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||           
T  24072387 tagggggcgtttgtttttgggaaacacaaactatttccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaa 24072486  T
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  24072487 gtgtttggcaaataacttgacattcctggaaaaattggaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctc 24072586  T
Q  264 ttcacatgggaataa 278  Q
    || ||||||||||||    
T  24072587 tttacatgggaataa 24072601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 76 - 278
Target Start/End: Original strand, 26695830 - 26696037
Alignment:
Q  76 cgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttg 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||||    
T  26695830 cgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttg 26695929  T
Q  176 gcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||||||||||||||||||| ||||||||||||||||||             ||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  26695930 gcaaataacttgacattcctagaaaaattggaagttacaatttttttaaaaaaaatctatgcataatatcatgggaatgtacattcccatctctttacat 26696029  T
Q  271 gggaataa 278  Q
    ||||||||    
T  26696030 gggaataa 26696037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 68 - 281
Target Start/End: Original strand, 56080596 - 56080812
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||          
T  56080596 ttagggggcgtttatttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 56080695  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||||    
T  56080696 agtgtttgacaaataacttgacattcctggaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccacctct 56080795  T
Q  265 tcacatgggaataaatt 281  Q
    | ||||| |||||||||    
T  56080796 taacatgagaataaatt 56080812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 40591264 - 40591054
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||       |||||    
T  40591264 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgagaatgaaaatatgaaaatttgattcttgggtatttattaaaaaaagtgtt 40591165  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40591164 tggcaaataatttgacattcctggaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccacctcttaacat 40591065  T
Q  271 gggaataaatt 281  Q
    | |||||||||    
T  40591064 gagaataaatt 40591054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 63 - 281
Target Start/End: Original strand, 39502582 - 39502805
Alignment:
Q  63 aaaaattaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttn 162  Q
    |||| ||||| || |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||     
T  39502582 aaaatttagggggtgtttatttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgtta 39502681  T
Q  163 nnnnnngtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcc 257  Q
          |||||||||||||||||||||||||||| |||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  39502682 aaaaaagtgtttggcaaataacttgacattcctgaaaaaattggaagttacaatttttttttttaaaatctatgcataatatcatgggaatgcacattcc 39502781  T
Q  258 catctcttcacatgggaataaatt 281  Q
    |||||||| |||||||||||||||    
T  39502782 catctctttacatgggaataaatt 39502805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 69 - 277
Target Start/End: Complemental strand, 9034170 - 9033957
Alignment:
Q  69 taggaggcgtttgtttttgggaaacacaaattattcccaggaataacata-cccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||          
T  9034170 tagggggcgtttgtttttgggaaacacaaattattcccaggaataacataccccgggaatgaaaatattaaaatttgattcttgggtatttgttaaaaaa 9034071  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  9034070 agtgtttgacaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcccatctc 9033971  T
Q  264 ttcacatgggaata 277  Q
    || ||||| |||||    
T  9033970 tttacatgagaata 9033957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 68 - 279
Target Start/End: Complemental strand, 29052171 - 29051953
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||          
T  29052171 ttagggggcgtttgtttttgggaaacacaaattattctcaggaataacatgcccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 29052072  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttac-------annnnnnnnaaatctatgcataatatcatgggaatgcacattcccat 260  Q
     |||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||| |||    
T  29052071 agtgtttggcaaataacttgacattcctggaaaaattggaagttactaatttttttttttttaaatctatgcataatatcatgggaatgcacattctcat 29051972  T
Q  261 ctcttcacatgggaataaa 279  Q
    ||||| |||||||||||||    
T  29051971 ctctttacatgggaataaa 29051953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 63 - 277
Target Start/End: Original strand, 39499243 - 39499462
Alignment:
Q  63 aaaaattaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttn 162  Q
    |||| ||||| || |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||     
T  39499243 aaaatttagggggtgtttatttttgggaaacacaaattattttcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgtta 39499342  T
Q  163 nnnnnngtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcc 257  Q
          |||||||||||||||||||||||||||| |||||||||||||||||             |||||||||||||||||||||||||||||||||||    
T  39499343 aaaaaagtgtttggcaaataacttgacattcctgaaaaaattggaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcc 39499442  T
Q  258 catctcttcacatgggaata 277  Q
    |||||||| |||||||||||    
T  39499443 catctctttacatgggaata 39499462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 2623450 - 2623310
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  2623450 ggcgtttgtttttgggaaacacaaattattcctaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 2623351  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  2623350 tggcaaataacttgacattcctgaaaaaattggaagttaca 2623310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 44506120 - 44506326
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||       |||||    
T  44506120 ggcgtttgtttttggaaaacacaaattatttccaggaataacatatctgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 44506219  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    ||||||||||||| ||||||||| ||||||||||| |||||           ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44506220 tggcaaataacttaacattcctgaaaaaattggaaattacaattttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacat 44506319  T
Q  271 gggaata 277  Q
    | |||||    
T  44506320 gagaata 44506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 76 - 278
Target Start/End: Complemental strand, 128142 - 127938
Alignment:
Q  76 cgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttg 175  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |  ||||||||       ||||||     
T  128142 cgtttgtttttaggaaacacaaattattctcaggaataacatacccgggaatgaaaatatgaaaatttgattcttgaatatttgttaaaagatgtgtttt 128043  T
Q  176 gcaaataacttgacattcctggaaaaattggaagttaca--nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatggg 273  Q
    |||||||||||||||||||| ||||||||  ||||||||          ||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  128042 gcaaataacttgacattccttgaaaaattaaaagttacaatttttttttaaatctatgcataatattatgggaatgtacattcccatctctttacatggg 127943  T
Q  274 aataa 278  Q
    |||||    
T  127942 aataa 127938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 76 - 281
Target Start/End: Original strand, 37995456 - 37995664
Alignment:
Q  76 cgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttg 175  Q
    |||||||||||||||||||||||||| || |||||||||  || |||||||||||||||||||||||| ||||| |||||||||||        ||||||    
T  37995456 cgtttgtttttgggaaacacaaattaatctcaggaataatttatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgtttg 37995555  T
Q  176 gcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgg 272  Q
    ||||||||||||| ||| |||||||||||| ||||||||            ||| |||| |||||||||||||||||||||||| |||||||| ||||||    
T  37995556 gcaaataacttgatatttctggaaaaattgaaagttacattttttttttagaatatatgtataatatcatgggaatgcacattctcatctctttacatgg 37995655  T
Q  273 gaataaatt 281  Q
    |||||||||    
T  37995656 gaataaatt 37995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 45620532 - 45620393
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||  ||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||  ||||||||| |       |||||    
T  45620532 ggcgtttgttttgaggatacacaaattatttccaggaataacatacacgggaatgaaaatacgaaaatttgattcctgggtatttgctaaaaaaagtgtt 45620433  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    | |||||||||||||||||||||| ||||||||||||||||    
T  45620432 t-gcaaataacttgacattcctgggaaaattggaagttaca 45620393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 51790324 - 51790244
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattc 148  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||||    
T  51790324 ttaggaggcgtttgttttggggaaacacaaattattcccatgaataacatacatgggaatgaaaatatgaaaatttgattc 51790244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 31335261 - 31335047
Alignment:
Q  76 cgtttgtttttgggaaacacaaattattcccag----gaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtg 171  Q
    |||||||||| |||||||| ||||||||| |||    ||||||||||  ||  ||| ||||||||||||||| ||||   || |||| ||       |||    
T  31335261 cgtttgttttggggaaacataaattattctcagtcaggaataacatagtcgaaaataaaaatatgaaaatttgattcataggaatttattaaaaaaagtg 31335162  T
Q  172 tttggcaaataacttgacattcctggaaaaattggaagttacannnnnnnn-----aaatctatgcataatatcatgggaatgcacattcccatctcttc 266  Q
    |||||||||||||||||||||| ||  ||||||||||||||||             ||||||||||||||||||||||||||||||||| |||||||||     
T  31335161 tttggcaaataacttgacattcatgcgaaaattggaagttacattttttacttcttaaatctatgcataatatcatgggaatgcacatttccatctcttt 31335062  T
Q  267 acatgggaataaatt 281  Q
    | ||| |||||||||    
T  31335061 atatgagaataaatt 31335047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 54230752 - 54230800
Alignment:
Q  94 acaaattattcccaggaataacatacccgggaatgaaaatatgaaaatt 142  Q
    ||||||||||| | | ||||||||| |||||||||||||||||||||||    
T  54230752 acaaattattctcggtaataacatatccgggaatgaaaatatgaaaatt 54230800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 4238603 - 4238558
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    |||||||| |||||| ||||||||| |||||| |||||||||||||    
T  4238603 gtgtttggtaaataagttgacattcttggaaatattggaagttaca 4238558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 30518445 - 30518665
Alignment:
Q  67 attaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnn 166  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||         
T  30518445 attagggggcgtttgtttttgggaaacacaaattattcccatgaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaa 30518544  T
Q  167 nngtgtttggcaaataacttgacattcctggaaaaattggaagttaca------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccat 260  Q
      ||||||||||||||||||||||||||||||||||||||||||||||              |||| |||||||||||||||||||||||||||||||||    
T  30518545 aagtgtttggcaaataacttgacattcctggaaaaattggaagttacaattttttttttaaaaaatatatgcataatatcatgggaatgcacattcccat 30518644  T
Q  261 ctcttcacatgggaataaatt 281  Q
    ||||| ||||| |||||||||    
T  30518645 ctctttacatgagaataaatt 30518665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 15805965 - 15805752
Alignment:
Q  67 attaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnn 166  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||         
T  15805965 attagggggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatattaaaatttgattcttgggtatttgttaaaaa 15805866  T
Q  167 nngtgtttggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
      ||||||| |||||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  15805865 aagtgtttgacaaataacttgacatttctggaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccatctc 15805766  T
Q  264 ttcacatgggaata 277  Q
    || ||||| |||||    
T  15805765 tttacatgagaata 15805752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 281
Target Start/End: Complemental strand, 5614748 - 5614531
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||||| ||||| || ||||||||          
T  5614748 ttagggggcgtttgtttttgggaaacacaaactattcccaggaataatatactcgggaatgaaaatataaaaatttgattcttggatatttgttaaaaaa 5614649  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
     ||||||||||||||||||||||||| ||||||||||| ||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  5614648 agtgtttggcaaataacttgacattcttggaaaaattgaaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcccatctc 5614549  T
Q  264 ttcacatgggaataaatt 281  Q
    || |||||||||||||||    
T  5614548 tttacatgggaataaatt 5614531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 66 - 281
Target Start/End: Original strand, 32597348 - 32597569
Alignment:
Q  66 aattaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnn 165  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||| ||||| |||||||||||        
T  32597348 aattagggggcgtttgtttttgggaaacacaaattattctcagaaataatatatccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaa 32597447  T
Q  166 nnngtgtttggcaaataacttgacattcctggaaaaattggaagttaca------nnnnnnnnaaatctatgcataatatcatgggaatgcacattccca 259  Q
        ||||| |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  32597448 aaaatgtttagcaaataacttgacattcctggaaaaattggaagttacaatttttttattttaaaatctatgcataatatcatgggaatgcacattccca 32597547  T
Q  260 tctcttcacatgggaataaatt 281  Q
    |||||| ||||| |||||||||    
T  32597548 tctctttacatgagaataaatt 32597569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 74 - 281
Target Start/End: Original strand, 27641025 - 27641239
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  27641025 ggcgtttgtttttgggaaacaaaaattattcccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 27641124  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttac-------annnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttc 266  Q
    |||||||||||||| ||||||||||||||||| |||||||       |        |||||||||||||||||||||||||||||||||| ||||||||     
T  27641125 tggcaaataacttggcattcctggaaaaattgaaagttacaatttttattttttttaaatctatgcataatatcatgggaatgcacattctcatctcttt 27641224  T
Q  267 acatgggaataaatt 281  Q
    ||||| |||||||||    
T  27641225 acatgagaataaatt 27641239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 74 - 277
Target Start/End: Complemental strand, 25898125 - 25897917
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  25898125 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 25898026  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| |     
T  25898025 tggcaaataacttgacattcctgaaaaaattggaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttat 25897926  T
Q  269 atgggaata 277  Q
    |||||||||    
T  25897925 atgggaata 25897917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 22213269 - 22213476
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  22213269 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 22213368  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    |||||||||||||||||||| || |||||||||||||||||            |||||||||||||||||||||||||||||||||||||| |||| |||    
T  22213369 tggcaaataacttgacattcttgaaaaaattggaagttacaattttttttttaaaatctatgcataatatcatgggaatgcacattcccatatctttaca 22213468  T
Q  270 tgggaata 277  Q
    ||||||||    
T  22213469 tgggaata 22213476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 30494084 - 30493876
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||       ||||||    
T  30494084 gcgtttgtttttggaaaacacaaattattcccaggaataatatacccgggaatgaaaatatgaaaatttgattattgggtatttgttaaaaaaagtgttt 30493985  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    ||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| |||    
T  30493984 ggcaaataacttgacattcctggaaaaattggaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttaca 30493885  T
Q  270 tgggaataa 278  Q
    |||||||||    
T  30493884 tgggaataa 30493876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 30534427 - 30534219
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||       ||||||    
T  30534427 gcgtttgtttttggaaaacacaaattattcccaggaataatatacccgggaatgaaaatatgaaaatttgattattgggtatttgttaaaaaaagtgttt 30534328  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    ||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||| |||    
T  30534327 ggcaaataacttgacattcctggaaaaattggaagttacaattttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttaca 30534228  T
Q  270 tgggaataa 278  Q
    |||||||||    
T  30534227 tgggaataa 30534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 68 - 265
Target Start/End: Original strand, 36275532 - 36275734
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||          
T  36275532 ttagggggcgtttgtttttgggaaacacaaattatttccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaa 36275631  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatct 262  Q
     ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||| |    
T  36275632 agtgtttggcaaataacttgacattcctggaaaaattggaagttacaatttttttaaaaaaaatctatgcataatatcatgggaatgcacattcccatat 36275731  T
Q  263 ctt 265  Q
    |||    
T  36275732 ctt 36275734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 42394239 - 42394022
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatga--------aaatttaattctagggtatttgttnnnn 165  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        |||||| ||||| |||||||||||        
T  42394239 ggcgtttgtttttgggaaacacaaattatttccaggaataacatacccgggaatgaaaatatgaaaatatgaaaatttgattcttgggtatttgttaaaa 42394140  T
Q  166 nnngtgtttggcaaataacttgacattcctggaaaaattggaagttaca--nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctc 263  Q
       ||||||||||||||||||||||||| ||||||||||| ||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  42394139 aaagtgtttggcaaataacttgacattcatggaaaaattgaaagttacaatttttttttaaatctatgcataatatcatgggaatgcacattcccatctc 42394040  T
Q  264 ttcacatgggaataaatt 281  Q
    || |||||||||||||||    
T  42394039 tttacatgggaataaatt 42394022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 26674060 - 26674266
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||   |||||||||||||||||||||| ||||| | |||||||||       |||||    
T  26674060 ggcgtttgttttggggaaacacaaattatttccagaaataacatatatgggaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtgtt 26674159  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca--nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatg 271  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  26674160 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttaaatctatgcataatattatgggactgcacattcccatctctttacatg 26674259  T
Q  272 ggaataa 278  Q
    |||||||    
T  26674260 ggaataa 26674266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 26945665 - 26945872
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||   |||||||||||||||||||||| ||||| | |||||||||       |||||    
T  26945665 ggcgtttgttttggggaaacacaaattatttccagaaataacatatatgggaatgaaaatatgaaaatttgattcttgtgtatttgttaaaaaaagtgtt 26945764  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  26945765 tggcaaataacttgacattcctggaaaaattggaagttacaattttttttttaaatctatgcataatattatgggactgcacattcccatctctttacat 26945864  T
Q  271 gggaataa 278  Q
    ||||||||    
T  26945865 gggaataa 26945872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 11740531 - 11740677
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnn 167  Q
    ||||| |||||||||||| ||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||| ||||  | |||||||||          
T  11740531 ttagggggcgtttgttttggggaaacacaaattactctcagaaataacatactcgggaatgaaaatatgaaaatttgattcctgtgtatttgttaaaaaa 11740630  T
Q  168 ngtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
     ||||||||||||||||||||||||||| | ||||| ||||||||||    
T  11740631 agtgtttggcaaataacttgacattccttggaaaataggaagttaca 11740677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 13946576 - 13946370
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||| |||||||||| |||        |||| |||||||||||        ||||    
T  13946576 ggcgtttgtttttgggaaacata--ttattcccaggaataacatacccgagaatgaaaatttga--------ttcttgggtatttgttaaaaaaaatgtt 13946487  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttacannnnnnnn---------aaatctatgcataatatcatgggaatgcacattcccatctct 264  Q
    ||||||||||||||||||| |||||||||||||||||||||                 |||||||||||||||||||||||||||||||||| |||||||    
T  13946486 tggcaaataacttgacatttctggaaaaattggaagttacaattttttttttaattttaaatctatgcataatatcatgggaatgcacattctcatctct 13946387  T
Q  265 tcacatgggaataaatt 281  Q
    | |||||||||||||||    
T  13946386 ttacatgggaataaatt 13946370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 28611718 - 28611761
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagtta 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  28611718 gtgtttggcaaataacttgacattcatggaaaaattggaagtta 28611761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 45360175 - 45360382
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||||| |||||||||||       |||||    
T  45360175 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacctcggaatgaaaatatcaaaatttgattcttgggtatttgttaaaaaaagtgtt 45360274  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcaca 269  Q
    |||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| |||    
T  45360275 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttaca 45360374  T
Q  270 tgggaata 277  Q
    ||||||||    
T  45360375 tgggaata 45360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 32550549 - 32550356
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||       |||||    
T  32550549 ggcgtttgtttttgggaaacacaaataattcacaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtt 32550450  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca--nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctctt 265  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||| ||||    
T  32550449 tggcaaataacttgacattcctggaaaaattggaagttacaatttttttaaaaatctatgcataatatcatgggaatgcacattcccatatctt 32550356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 74 - 281
Target Start/End: Original strand, 5555198 - 5555408
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||| || ||||||||       |||||    
T  5555198 ggcgtttgtttttgggaaacacaaattattctcagaaataacatacccgggaatgaaaatataaaaatttgattcttggatatttgttaaaaaaagtgtt 5555297  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacat 270  Q
    |||| |||||||||||||| |||||||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5555298 tggcgaataacttgacatttctggaaaaattggaagttacaatttttttttaaaatctatgcataatatcatgggaatgcacattctcatctctttacat 5555397  T
Q  271 gggaataaatt 281  Q
    | |||||||||    
T  5555398 gcgaataaatt 5555408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 75 - 276
Target Start/End: Complemental strand, 43069215 - 43069011
Alignment:
Q  75 gcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgttt 174  Q
    |||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||        |||||    
T  43069215 gcgtttgtttttgaaaaacacaaattattcccaggaataacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaatgttt 43069116  T
Q  175 ggcaaataacttgacattcctggaaaaattggaagttaca---nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatg 271  Q
    ||||||||| |||||||| ||| |||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43069115 ggcaaataatttgacatttctgaaaaaattggaagttacaattttttttttaaatctatgcataatatcatgggaatgcacattcccatctctttacatg 43069016  T
Q  272 ggaat 276  Q
    |||||    
T  43069015 ggaat 43069011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 281
Target Start/End: Original strand, 19565168 - 19565380
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaa-ttattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgt 172  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||||  ||| ||||||||||||||||||| ||||| |||||||| ||       ||||    
T  19565168 ggcgtttgtttttggaaaacacaaaattattcccaagaataacatattcggaaatgaaaatatgaaaatttgattcttgggtatttcttaaaaaaagtgt 19565267  T
Q  173 ttggcaaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcac 268  Q
    ||||||||||||||||||||||||||||||||||||||||||            |||| |||||||||||||||||||||||||||||||||||||| ||    
T  19565268 ttggcaaataacttgacattcctggaaaaattggaagttacaatttttttttttaaatttatgcataatatcatgggaatgcacattcccatctctttac 19565367  T
Q  269 atgggaataaatt 281  Q
    |||||||||||||    
T  19565368 atgggaataaatt 19565380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 14236401 - 14236603
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||| |||||||||||       |||||    
T  14236401 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccggga--------atgaaaatttgattcttgggtatttgttaaaaaaagtgtt 14236492  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttca 267  Q
    |||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||| |    
T  14236493 tggcaaataacttgacattcctggaaaaattggaagttacaattttttttttttaaaatctatgcataatatcatgggaatgcacattcccatctcttta 14236592  T
Q  268 catgggaataa 278  Q
    |||||||||||    
T  14236593 catgggaataa 14236603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 40125432 - 40125627
Alignment:
Q  90 aaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttggcaaataacttgac 189  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||       |||||||||| ||||||||||    
T  40125432 aaacacaaactattcccaggaacaacatactcgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaagtgtttggcatataacttgac 40125531  T
Q  190 attcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataaatt 281  Q
    |||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  40125532 attcctggaaaaattggaagttacaatttttttttttaaatctatgcataatatcatgggaatgcacattcctatatctttacatgggaataaatt 40125627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 278
Target Start/End: Original strand, 21620060 - 21620252
Alignment:
Q  91 aacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgtt-nnnnnnngtgtttggcaaataacttgac 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||        |||||| ||||||||||||||    
T  21620060 aacacaaattattcccaggaataacatacctgggaatgaaaatatgaaaatttgattcttgggtatttgttaaaaaaaggtgtttagcaaataacttgac 21620159  T
Q  190 attcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgggaataa 278  Q
    |||||| ||||||||||||||||||            |||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  21620160 attcctagaaaaattggaagttacaattttttttttaaaatctatacataatatcatgggaatgtacattcccatctctttacatgggaataa 21620252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 74 - 278
Target Start/End: Original strand, 3656526 - 3656727
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||        |||||||||| ||||| |||| ||||||       |||||    
T  3656526 ggcgtttgtttttgggaaacacaaattattcccaggaataacatattaggga--------atgaaaatttgattcttgggtgtttgttaaaaaaagtgtt 3656617  T
Q  174 tggcaaataacttgacattcctggaaaaattggaagttaca-----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcac 268  Q
    |||||||||||||||||||||||||||||||| ||||||||             ||||||||||||||||||||||||||||| ||||||||||||  ||    
T  3656618 tggcaaataacttgacattcctggaaaaattgaaagttacaattttttttttttaaatctatgcataatatcatgggaatgcatattcccatctctgtac 3656717  T
Q  269 atgggaataa 278  Q
    ||||||||||    
T  3656718 atgggaataa 3656727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 4643592 - 4643797
Alignment:
Q  77 gtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnngtgtttgg 176  Q
    ||||||||  ||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||  |||||||||||       ||||||||    
T  4643592 gtttgtttcggggaaacacaaattattcccaagaataacatatccaggaatgaaaatatgaaaatttgattcatgggtatttgttaaaaaaagtgtttgg 4643691  T
Q  177 caaataacttgacattcctggaaaaattggaagttaca----nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatctcttcacatgg 272  Q
    | ||||| |||||||||||   ||||||||||||||||            |||  |||| | ||||||||||||||||||||||||||||||| ||||||    
T  4643692 cgaataatttgacattcctaagaaaattggaagttacaattttttttaaaaaaattatgtagaatatcatgggaatgcacattcccatctctttacatgg 4643791  T
Q  273 gaataa 278  Q
    ||||||    
T  4643792 gaataa 4643797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 6694199 - 6694056
Alignment:
Q  74 ggcgtttgtttttgggaaacacaaattattcccaggaataacataccc--gggaatgaaaatatgaaaatttaattc-tagggtatttgttnnnnnnngt 170  Q
    |||| ||| ||| ||||||||||||||||||||||||||||   ||||  | |||||||||||||||||||| |||| | |||||||||||       ||    
T  6694199 ggcgcttgctttggggaaacacaaattattcccaggaataaacaacccctgagaatgaaaatatgaaaatttgattcgtggggtatttgttaaaaaaagt 6694100  T
Q  171 gtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  6694099 gtttagcaaataacttgacattcctgaaaaaattggaagttaca 6694056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 3027730 - 3027868
Alignment:
Q  77 gtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgt-tnnnnnnngtgtttg 175  Q
    ||||||||| | |||||||||||||||| |||||||||| ||||  ||||||||||||||||||||| ||||  ||||||||||         |||||||    
T  3027730 gtttgttttagtgaaacacaaattattctcaggaataacttacctcggaatgaaaatatgaaaatttgattcctgggtatttgtcaaaaaaaagtgtttg 3027829  T
Q  176 gcaaataacttgacattcctggaaaaattggaagttaca 214  Q
     |||||||||||||||||  || ||||||| ||||||||    
T  3027830 acaaataacttgacattcacgggaaaattgtaagttaca 3027868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 29381388 - 29381450
Alignment:
Q  9 caagaatataatgaaagggattcctcaatatttnnnnnnntaaattatttggctaaaaattag 71  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  29381388 caagaatataatgaaagggattcctcaatatttaaaaaaataaattatttggctaaaaattag 29381450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 25304453 - 25304381
Alignment:
Q  89 gaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgtt 161  Q
    |||||||||||||||||||| |||||| ||| |||||| |||||||| ||||| ||||||  |||||||||||    
T  25304453 gaaacacaaattattcccagaaataacttactcgggaacgaaaatataaaaatataattcctgggtatttgtt 25304381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 16296953 - 16296884
Alignment:
Q  68 ttaggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatga 137  Q
    ||||||| |||||||||  | ||||||||||||||||  ||||||||| ||  |||||||||||||||||    
T  16296953 ttaggagacgtttgtttcggagaaacacaaattattcttaggaataacttattcgggaatgaaaatatga 16296884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 35372014 - 35371964
Alignment:
Q  92 acacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatt 142  Q
    ||||||||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  35372014 acacaaattatacccaggaataacttacccgaaaataaaaatatgaaaatt 35371964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 2782491 - 2782446
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    ||||||||||||||| |||||||||||| |||||||  ||||||||    
T  2782491 gtgtttggcaaataagttgacattcctgaaaaaattaaaagttaca 2782446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 35371934 - 35371889
Alignment:
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca 214  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  35371934 gtgtttgacaaataagttggcattcctgaaaaaattggaagttaca 35371889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 59014 - 59229
Alignment:
Q  69 taggaggcgtttgtttttgggaaacacaaattattcccaggaataacatacccgggaatgaaaatatgaaaatttaattctagggtatttgttnnnnnnn 168  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||           
T  59014 tagggggcgtttgtttttgggaaacacaaattattcccgggaataacatacccgggaatgaaaatatgaaaatttgattcttgggtatttgttaagaaaa 59113  T
Q  169 gtgtttggcaaataacttgacattcctggaaaaattggaagttaca------nnnnnnnnaaatctatgcataatatcatgggaatgcacattcccatct 262  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||              ||||||||||||||||||||||||||| |||||| |||||    
T  59114 gtgttttgcaaataacttgacgttcctggaaaaattggaagttacaatttttttttttaaaaatctatgcataatatcatgggaatgaacattctcatct 59213  T
Q  263 cttcacatgggaataa 278  Q
    ||| ||||||||||||    
T  59214 ctttacatgggaataa 59229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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