View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_80 (Length: 294)
Name: NF21242_high_80
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_80 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 36404460 - 36404737
Alignment:
| Q |
17 |
aaatatgaatggaatattcaaattat---tactccatcaatttatgtttatattgttaggtctctgtcatttcaccttattttgttgataatatcattca |
113 |
Q |
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| T |
36404460 |
aaatatgaatggaatattcaaattataattactccatcaatttatgtttatattgttaggtctctgtcatttcaccttattttgttgataatatcattca |
36404559 |
T |
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| Q |
114 |
tatatgtcttgcttgcatactcaccgtcaccctacattattaagtcacnnnnnnnnnnnnnn---cgcatgctaatgatcacattaataaatatttgata |
210 |
Q |
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| T |
36404560 |
tatatgtcttgcttgcatactcacc------ctacattattaagtcaccaaaaaaaaaaaaaaaacgcatgctaatgatcacattaataaatatttgata |
36404653 |
T |
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| Q |
211 |
ggctaaatgttatccgtaaacaagtttagaaaaagtgaaaataatgtaaaaccaagaacgcaacatcaaaaaattgtactccct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36404654 |
ggctaaatgttatccgtaaacaagtttagaaaaagtgaaaataatgtaaaaccaagaacgcaacatcaaaaaattgtactccct |
36404737 |
T |
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