View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_81 (Length: 291)
Name: NF21242_high_81
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_81 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 54238050 - 54238323
Alignment:
| Q |
2 |
aaatgttgtaaggcgaacgagcagtcatgacggtggaaaaagtaattctcaaatatatattatgatcaaaattctatttatgcaaaatcctaaatacgtc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54238050 |
aaatgttgtaaggcgaacgagcagtcatgacggtggaaaaagtaattctcaaatatatattatgatcaaaattctatttatgcaaaatcctaaatacgtc |
54238149 |
T |
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| Q |
102 |
atataaaaatgaaataggaactatcaaatttatttatttataaactaaatttgaaatatcatgattttatagggactaaaggcacttttttcatgaaatt |
201 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54238150 |
atataaaaattaaataggaactatcaaatttatttatttataaactaaatttgaaatatcatgattttatagggactaaaggcacttttttcatgaaatt |
54238249 |
T |
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| Q |
202 |
cgatgtatggtttaaacaccgattaatccgaaaactactttctccgtctattaacgaatgatgacccaacatat |
275 |
Q |
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|||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
54238250 |
cgatgtatggtttaaacatcgattaattcgaaaactaatttcttcgtctattaacgaatgatgacccaacatat |
54238323 |
T |
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