View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_86 (Length: 268)

Name: NF21242_high_86
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_86
NF21242_high_86
[»] chr2 (4 HSPs)
chr2 (13-268)||(34746264-34746519)
chr2 (45-237)||(34758794-34758987)
chr2 (108-242)||(34750854-34750986)
chr2 (37-74)||(34755434-34755471)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 34746264 - 34746519
Alignment:
Q  13 aatatgcggaaaacatgtggaaaaaccaaagtagattttttgaaacaaaaatacctgatatactaacatattttctaaatagagaaattgtcagcgacaa 112  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34746264 aatatgtggaaaacatgtggaaaaaccatagtagattttttgaaacaaaaatacctgatatactaacatattttttaaatagagaaattgtcagcgacaa 34746363  T
Q  113 acctctaaaattagagtctccaggcagggtgactttaggagtatgcctaacaaattattgcagccaacaaagcttagttccaaatgtcttaacattttaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34746364 acctctaaaattagagtctccaggcagggtgactttaggagtatgcctaacaaattattgcagccaacaaagcttagttccaaatgtcttaacattttaa 34746463  T
Q  213 atggacgaatatctgcaaaagaatgtttcacaaactacaaaaaattgtagtataat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34746464 atggacgaatatctgcaaaagaatgtttcacaaactacaaaaaattgtagtataat 34746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 34758794 - 34758987
Alignment:
Q  45 agattttttgaaacaaaaatacctgatatactaacatattttct-aaatagagaaattgtcagcgacaaacctctaaaattagagtctccaggcagggtg 143  Q
    |||||||||| ||||||| ||||| || || |||||| |||| | ||||  ||||||| |||   |||||||| |||||||||||||| ||| || || |    
T  34758794 agattttttggaacaaaactacctcatgtattaacatgttttttgaaatttagaaattctcaattacaaacctgtaaaattagagtcttcagacatggcg 34758893  T
Q  144 actttaggagtatgcctaacaaattattgcagccaacaaagcttagttccaaatgtcttaacattttaaatggacgaatatctgcaaaagaatg 237  Q
    | |||| ||||||||||  |||||  | |||||||||| || ||||||||||||| |  ||||||  ||||||| |||||||||||||||||||    
T  34758894 aatttaagagtatgcctctcaaatattcgcagccaacagagtttagttccaaatgacgcaacattccaaatggaggaatatctgcaaaagaatg 34758987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 242
Target Start/End: Original strand, 34750854 - 34750986
Alignment:
Q  108 gacaaacctctaaaattagagtctccaggcagggtgactttaggagtatgcctaacaaattattgcagccaacaaagcttagttccaaatgtcttaacat 207  Q
    ||||||||| |||||||||  ||||||| |||||||||| || ||||||| |||||||||  |||||||||||| || ||||||||| ||| || ||| |    
T  34750854 gacaaacctgtaaaattag--tctccagacagggtgactgtaagagtatggctaacaaatatttgcagccaacagagtttagttccagatgactcaacct 34750951  T
Q  208 tttaaatggacgaatatctgcaaaagaatgtttca 242  Q
    |  ||||||| |||||||| |||||||||| ||||    
T  34750952 tccaaatggaggaatatcttcaaaagaatggttca 34750986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 34755434 - 34755471
Alignment:
Q  37 accaaagtagattttttgaaacaaaaatacctgatata 74  Q
    ||||||||||||||||||||||||||||| || |||||    
T  34755434 accaaagtagattttttgaaacaaaaatatctcatata 34755471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University