View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_88 (Length: 267)

Name: NF21242_high_88
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_88
NF21242_high_88
[»] chr3 (3 HSPs)
chr3 (18-199)||(368716-368897)
chr3 (41-198)||(43306517-43306675)
chr3 (41-199)||(3068718-3068878)
[»] chr8 (10 HSPs)
chr8 (41-198)||(42891510-42891667)
chr8 (41-198)||(42890476-42890635)
chr8 (41-178)||(18180577-18180716)
chr8 (42-164)||(26374986-26375111)
chr8 (41-155)||(24578664-24578780)
chr8 (41-124)||(22511964-22512049)
chr8 (41-124)||(22519264-22519349)
chr8 (131-199)||(23570664-23570731)
chr8 (110-158)||(30440786-30440834)
chr8 (83-165)||(31071998-31072080)
[»] chr2 (4 HSPs)
chr2 (41-199)||(27955997-27956157)
chr2 (41-199)||(31634190-31634350)
chr2 (41-139)||(33051704-33051805)
chr2 (69-155)||(32163658-32163745)
[»] chr1 (3 HSPs)
chr1 (41-198)||(13443825-13443991)
chr1 (113-181)||(28660598-28660666)
chr1 (150-199)||(23987756-23987805)
[»] chr6 (4 HSPs)
chr6 (41-199)||(8048808-8048969)
chr6 (45-199)||(18718043-18718199)
chr6 (42-103)||(11190554-11190618)
chr6 (39-112)||(24443002-24443078)
[»] scaffold0531 (1 HSPs)
scaffold0531 (41-157)||(11473-11592)
[»] chr4 (3 HSPs)
chr4 (115-199)||(13991204-13991288)
chr4 (69-158)||(50515788-50515878)
chr4 (49-112)||(22691322-22691388)
[»] chr7 (4 HSPs)
chr7 (41-124)||(13886075-13886162)
chr7 (152-199)||(4300659-4300706)
chr7 (44-124)||(1220357-1220440)
chr7 (41-103)||(4300563-4300628)
[»] chr5 (3 HSPs)
chr5 (41-109)||(19497236-19497307)
chr5 (45-103)||(21848903-21848964)
chr5 (50-103)||(9868341-9868396)
[»] scaffold0240 (2 HSPs)
scaffold0240 (152-199)||(16226-16273)
scaffold0240 (41-103)||(16130-16195)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 368897 - 368716
Alignment:
Q  18 tcaaggacctacttgagtggcgtgtcagttgttatcagagcaggtttctccttctttttctaacggatcagccatgggagatcaactgatgacgagggca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  368897 tcaaggacctacttgagtggcgtgtcagttgttatcagagcaggtttctccttctttttctaacggatcagccatgggagatcaaccgatgacgagggca 368798  T
Q  118 gagtttgccggcataaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  368797 gagtttgccggcataaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 368716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 43306675 - 43306517
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcg 138  Q
    |||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  43306675 gtcagttggtatcagagcaggtttctcctgttcttttcctaacggatcagccatgggagatcaactg-tgacgagggcagagtttgccggcatcaccgcg 43306577  T
Q  139 actcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggtt 198  Q
    |||||||||||   |||||||||||||| |||||||||| |||| |||||||||||||||    
T  43306576 actcttaccacagacatcaaagctctgttagatcagatgtcggcgtggacagctaaggtt 43306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 3068878 - 3068718
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| ||| |||||| |||||||||  ||| || |||||  ||| |||||||||||||||||| |||||| ||| ||||||||||||||||||| |    
T  3068878 gtcagttggtattagagcatgtttctcctgttctcttcctaacatgataagccatgggagatcaacttatgacgggggaagagtttgccggcataaccac 3068779  T
Q  138 gactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
     ||||||||||||| |||| ||| | ||| ||||||||||| ||| |||||| |||||||||    
T  3068778 aactcttaccacga-catcgaagatttgttagatcagatggtggcgtggacaactaaggttg 3068718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 42891667 - 42891510
Alignment:
Q  41 gtcagttgttatcagagcaggtttctccttctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcgac 140  Q
    |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42891667 gtcagttggtatcaaagcaggtttctcctacttttcctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcatcaccgcgac 42891568  T
Q  141 tcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggtt 198  Q
    ||||||||||  |||||||||||||| |||||||||| |||| ||||||  |||||||    
T  42891567 tcttaccacggacatcaaagctctgttagatcagatgtcggcgtggacatgtaaggtt 42891510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 42890476 - 42890635
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcg 138  Q
    |||||||| ||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  42890476 gtcagttggtatcagagcaggtttctcctgttcttttcctaacagatcagccatgggagatcaactgatgacgagggcagagtttgccgacatcaccgcg 42890575  T
Q  139 actcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggtt 198  Q
    ||||||||||||  |||||||||||||| |||||||||| |||| ||||| | |||||||    
T  42890576 actcttaccacggacatcaaagctctgttagatcagatgtcggcgtggactggtaaggtt 42890635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 18180716 - 18180577
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| ||||| ||||||||||||||  |||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18180716 gtcagttggtatcaaagcaggtttctcctgttcttttcctaacatgatcagccatgggagatcaacttatgacgagggcagagtttgccgacataaccgc 18180617  T
Q  138 gactcttaccacgaccatcaaagctctgtcagatcagatgg 178  Q
    ||||||||||| || |||||||| ||| ||| |||||||||    
T  18180616 gactcttaccatga-catcaaagatctttcatatcagatgg 18180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 26374986 - 26375111
Alignment:
Q  42 tcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcg 138  Q
    ||||||| ||||||||||||||||||||  |||||| |||||  ||||| |||||||||||||||||||||||| |||| ||||| ||| ||||||||||    
T  26374986 tcagttggtatcagagcaggtttctcctattcttttcctaacatgatcacccatgggagatcaactgatgacgaaggcaaagtttcccgacataaccgcg 26375085  T
Q  139 actcttaccacgaccatcaaagctct 164  Q
    ||| |||| |||||||||||| ||||    
T  26375086 acttttacgacgaccatcaaatctct 26375111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 24578780 - 24578664
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcg 138  Q
    |||| ||| ||||||||||||||||||||  ||||||  ||   |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||    
T  24578780 gtcaattggtatcagagcaggtttctcctattcttttcgtacgtgatcagccatggaagatcaaccgatgacgagggcaaagtttgccggcataaccacg 24578681  T
Q  139 actcttaccacgaccat 155  Q
    |||||||||||||||||    
T  24578680 actcttaccacgaccat 24578664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 22512049 - 22511964
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttg 124  Q
    |||||||| ||||||||||||||||||||  |||||| |||| |||||||||||||||||||||| | | ||||||||||| ||||    
T  22512049 gtcagttggtatcagagcaggtttctcctgttcttttcctaatggatcagccatgggagatcaaccggttacgagggcagaatttg 22511964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 22519349 - 22519264
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttg 124  Q
    |||||||| ||||||||||||||||||||  |||||| |||| |||||||||||||||||||||| | | ||||||||||| ||||    
T  22519349 gtcagttggtatcagagcaggtttctcctgttcttttcctaatggatcagccatgggagatcaaccggttacgagggcagaatttg 22519264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 23570664 - 23570731
Alignment:
Q  131 taaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||||||||||||| ||||||||| |||| | |||||||||||| ||||||||||||||||    
T  23570664 taaccgcgactcttaccacgac-atcaaagctttgtctgttcagatggcggcgtggacagctaaggttg 23570731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 30440786 - 30440834
Alignment:
Q  110 cgagggcagagtttgccggcataaccgcgactcttaccacgaccatcaa 158  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  30440786 cgagggcagagtttgtcggcataaccgcaactcttaccacgaccatcaa 30440834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 31072080 - 31071998
Alignment:
Q  83 gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcgactcttaccacgaccatcaaagctctg 165  Q
    |||||||||||| | ||||||   ||||||| ||| ||||||  |||||||||   |||||||||||||||||||| ||||||    
T  31072080 gatcagccatggaacatcaaccagtgacgagtgcaaagtttgttggcataaccaaaactcttaccacgaccatcaatgctctg 31071998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 27956157 - 27955997
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgat-gacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27956157 gtcagttggtatcagagcaggtttctcctgttcttttcctaacggatcagccatgggagatcaactgattgacgagagcagagtttgccggcataaccgc 27956058  T
Q  138 gactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||| ||||||||||||||||    
T  27956057 gactcttaccacga-catcgaagatttgtcagatcagatggcggcgtggacagctaaggttg 27955997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 31634190 - 31634350
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| ||||| ||||||||||||||  |||||| ||| |  ||||| | |||||||||||| | ||||||||||||||||||||||||||||||||    
T  31634190 gtcagttggtatcatagcaggtttctcctgttcttttcctagcatgatcaactatgggagatcaaattatgacgagggcagagtttgccggcataaccgc 31634289  T
Q  138 gactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||| | |||||||||||| ||||||||||||||||| |||||| |||||||||    
T  31634290 gactcttaccac-aacatcaaagctctatcagatcagatggcggcgtggacaactaaggttg 31634350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 33051704 - 33051805
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| ||||||||||||||||||||  |||||| |||||| ||||||||||| ||||||||| ||||||| ||| |||||||| ||||||||||||    
T  33051704 gtcagttggtatcagagcaggtttctcctgttcttttcctaacgtgatcagccatgagagatcaacagatgacgggggtagagtttgtcggcataaccgc 33051803  T
Q  138 ga 139  Q
    ||    
T  33051804 ga 33051805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 32163745 - 32163658
Alignment:
Q  69 ttctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcgactcttaccacgaccat 155  Q
    ||||||| |||||| ||||| |||||||||||||||| || ||||||||||||||| || | |||||| ||||||||||| |||||||    
T  32163745 ttcttttcctaacgtgatcaaccatgggagatcaacttataacgagggcagagttttccagtataaccacgactcttaccgcgaccat 32163658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 13443991 - 13443825
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgcc-------ggcat 131  Q
    |||||||| ||||||||||||||| || |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  13443991 gtcagttggtatcagagcaggtttatcatgttcttttcctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcaatcggcat 13443892  T
Q  132 aaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggtt 198  Q
    |||| ||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||    
T  13443891 aaccacgactcttaccacggacatcaaagctctgttagatcagatgtcggcatggacagctaaggtt 13443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 28660666 - 28660598
Alignment:
Q  113 gggcagagtttgccggcataaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcgg 181  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  28660666 gggcagagtttaccggcataaccgcgactcttaccacgaccattaaagctttgtcatatcagatggcgg 28660598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 23987756 - 23987805
Alignment:
Q  150 gaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||||||||||||||||||||| || | ||||||||| ||||    
T  23987756 gaccatcaaagctctgtcagatcagatggctgcgttgacagctaacgttg 23987805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 8048969 - 8048808
Alignment:
Q  41 gtcagttgttatcagagca-ggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| |||||||||| ||||||||||  |||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||  |    
T  8048969 gtcagttggtatcagagcatggtttctcctgttcttttcctaacggattagccatgggagatcaactgatgatgagggtagagtttgtcggcataacgac 8048870  T
Q  138 gactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    ||||||||||||||||||||||||| |||||||||||||| || | |||| || ||||||||    
T  8048869 gactcttaccacgaccatcaaagctttgtcagatcagatgacgacgtggatagttaaggttg 8048808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 18718199 - 18718043
Alignment:
Q  45 gttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcgact 141  Q
    |||| ||||||||||||||||||||  |||||| |||||  |||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||    
T  18718199 gttggtatcagagcaggtttctcctgttcttttcctaacatgatcagccatgggagatcaaattatgacgagggtagagtttgccggcataagcgcgact 18718100  T
Q  142 cttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||| |||||||| | |||||| |||||||||||| |||||| |||||||||    
T  18718099 cttaccacga-catcaaagttttgtcagttcagatggcggcgtggacaactaaggttg 18718043  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 11190554 - 11190618
Alignment:
Q  42 tcagttgttatcagagcaggtttctcc--ttctttttctaacg-gatcagccatgggagatcaac 103  Q
    ||||||| |||||||||||||||||||  ||| ||| |||||| |||||||||| ||||||||||    
T  11190554 tcagttggtatcagagcaggtttctcctgttcgtttcctaacgtgatcagccataggagatcaac 11190618  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 24443078 - 24443002
Alignment:
Q  39 gtgtcagttgttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacga 112  Q
    |||| ||||| |||||||||| ||||||| |  |||||| |||||| ||||||||||||| ||||||| ||||||||    
T  24443078 gtgttagttggtatcagagcatgtttctcttgttcttttcctaacgtgatcagccatgggcgatcaaccgatgacga 24443002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 11592 - 11473
Alignment:
Q  41 gtcagttgttatcagagca-ggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgc 137  Q
    |||||||| |||||||||| ||||||||||  |||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||  |    
T  11592 gtcagttggtatcagagcatggtttctcctgttcttttcctaacggattagccatgggagatcaactgatgatgagggtagagtttgtcggcataacgac 11493  T
Q  138 gactcttaccacgaccatca 157  Q
    ||||||||||||||||||||    
T  11492 gactcttaccacgaccatca 11473  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 13991288 - 13991204
Alignment:
Q  115 gcagagtttgccggcataaccgcgactcttaccacgaccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || | ||||| ||||||||    
T  13991288 gcagagtttagcggcataaccgcgactattaccacgaccatcatagctctgtcagatcagatggcagcgttgacagttaaggttg 13991204  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 50515878 - 50515788
Alignment:
Q  69 ttctttttctaacg-gatcagccatgggagatcaactgatgacgagggcagagtttgccggcataaccgcgactcttaccacgaccatcaa 158  Q
    |||||||| ||||| ||||||| |||||||||||||   ||||||| |||||||||| || ||||||| ||||||||||||||||||||||    
T  50515878 ttctttttgtaacgtgatcagcaatgggagatcaaccagtgacgagagcagagtttgtcgacataaccacgactcttaccacgaccatcaa 50515788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 22691322 - 22691388
Alignment:
Q  49 ttatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaactgatgacga 112  Q
    |||| ||||||||||||||||  |||||| |||| | ||||||||||||||||||||||| ||||||    
T  22691322 ttattagagcaggtttctcctgttcttttcctaaagtgatcagccatgggagatcaactggtgacga 22691388  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 13886162 - 13886075
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcct--tctttttc-taacg-gatcagccatgggagatcaactgatgacgagggcagagtttg 124  Q
    |||||||| ||| ||||||||||||||||  |||||| | ||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  13886162 gtcagttggtattagagcaggtttctcctgttcttttccctaacgtgatcagccatgggagatcaaccgattacgagggcagagtttg 13886075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 4300659 - 4300706
Alignment:
Q  152 ccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||    
T  4300659 ccatcaaagctctgtcagattagatggcggggtggacagctaaggttg 4300706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 1220440 - 1220357
Alignment:
Q  44 agttgttatcagagca-ggtttctcct--tctttttctaacggatcagccatgggagatcaactgatgacgagggcagagtttg 124  Q
    ||||| |||||||||  ||||||||||  |||||| ||||||||||||||||||||||||||| | | |||||| |||| ||||    
T  1220440 agttggtatcagagcctggtttctcctgttcttttcctaacggatcagccatgggagatcaaccggttacgaggacagaatttg 1220357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 4300563 - 4300628
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcc--ttctttttctaacg-gatcagccatgggagatcaac 103  Q
    |||||||| |||||||||||||||||||  ||||||| |||| | ||||||||||| |||||||||    
T  4300563 gtcagttggtatcagagcaggtttctccagttcttttcctaatgtgatcagccatgagagatcaac 4300628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 19497307 - 19497236
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcc--ttctttttctaacg-gatcagccatgggagatcaactgatga 109  Q
    |||||||| |||||||||||||||||||  ||||||| |||||| ||||  ||||||||||||||| |||||    
T  19497307 gtcagttgatatcagagcaggtttctcctgttcttttcctaacgtgatccaccatgggagatcaaccgatga 19497236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 21848964 - 21848903
Alignment:
Q  45 gttgttatcagagcaggtttctccttctttttc--taacg-gatcagccatgggagatcaac 103  Q
    |||| ||||||||||||||||||||  ||||||  ||||| |||||||||||||||||||||    
T  21848964 gttggtatcagagcaggtttctcctgttttttccctaacgtgatcagccatgggagatcaac 21848903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 9868396 - 9868341
Alignment:
Q  50 tatcagagcaggtttctcct--tctttttctaacg-gatcagccatgggagatcaac 103  Q
    ||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  9868396 tatcagagcaggttt-tcctgttctttttctaacgtgatcagccatgggagatcaac 9868341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 16226 - 16273
Alignment:
Q  152 ccatcaaagctctgtcagatcagatggcggcatggacagctaaggttg 199  Q
    |||||||||||||||||||| |||||||||| | || |||||||||||    
T  16226 ccatcaaagctctgtcagattagatggcggcgttgatagctaaggttg 16273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 16130 - 16195
Alignment:
Q  41 gtcagttgttatcagagcaggtttctcc--ttctttttctaacg-gatcagccatgggagatcaac 103  Q
    |||||||| |||||||||||||||||||  ||||||| |||| | ||||||||||| |||||||||    
T  16130 gtcagttggtatcagagcaggtttctccagttcttttcctaatgtgatcagccatgagagatcaac 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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