View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21242_high_90 (Length: 265)

Name: NF21242_high_90
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21242_high_90
NF21242_high_90
[»] chr1 (3 HSPs)
chr1 (15-191)||(42169655-42169831)
chr1 (189-246)||(42169515-42169572)
chr1 (109-166)||(48064182-48064241)
[»] chr7 (1 HSPs)
chr7 (109-138)||(5620261-5620290)
[»] chr4 (2 HSPs)
chr4 (109-163)||(17823012-17823068)
chr4 (110-138)||(30090132-30090160)
[»] chr5 (1 HSPs)
chr5 (109-137)||(14955597-14955625)
[»] chr3 (1 HSPs)
chr3 (110-138)||(37308232-37308260)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 42169831 - 42169655
Alignment:
Q  15 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaaaatgtaatttctgttagagattaccattaccctacgtaggcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42169831 acatcatcacaagattttgaaatttgtgccatattccctcctttacgaaccctgtgaacatgtaatttctgttagagattaccattaccctacgtaggcc 42169732  T
Q  115 ctgtttggataaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42169731 ctgtttggataaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct 42169655  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 42169572 - 42169515
Alignment:
Q  189 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattc 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42169572 tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattc 42169515  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 48064182 - 48064241
Alignment:
Q  109 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcatgat 166  Q
    |||||| |||||||||||||||||||||| ||  || ||||||||||  |||||||||||    
T  48064182 taggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 5620290 - 5620261
Alignment:
Q  109 taggccctgtttggataaacaacttaatta 138  Q
    ||||||||||||||||||||||||||||||    
T  5620290 taggccctgtttggataaacaacttaatta 5620261  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 17823012 - 17823068
Alignment:
Q  109 taggccctgtttggataaacaacttaattagc--ctcatagcataaggacttatcat 163  Q
    |||||| |||||||||||||| ||||||| ||  |||||||||||||| ||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataagggcttatcat 17823068  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 30090132 - 30090160
Alignment:
Q  110 aggccctgtttggataaacaacttaatta 138  Q
    |||||||||||||||||||||||||||||    
T  30090132 aggccctgtttggataaacaacttaatta 30090160  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 14955597 - 14955625
Alignment:
Q  109 taggccctgtttggataaacaacttaatt 137  Q
    |||||||||||||||||||||||||||||    
T  14955597 taggccctgtttggataaacaacttaatt 14955625  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 37308260 - 37308232
Alignment:
Q  110 aggccctgtttggataaacaacttaatta 138  Q
    |||||||||||||||||||||||||||||    
T  37308260 aggccctgtttggataaacaacttaatta 37308232  T

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