View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_95 (Length: 250)
Name: NF21242_high_95
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_95 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 35503039 - 35502848
Alignment:
| Q |
9 |
gaaatgaaagggctggccttcagcttctgttgctacctgggtggccaaaccccctacaggtcctactactttgaggccaaggtaggcatcggcaatgtac |
108 |
Q |
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| T |
35503039 |
gaaatgaaagggctggccttcagcttctgttgctacctgggtggccaaaccccctgcaggtcctactactttgaggccaaggtaggcatcggcaatgtac |
35502940 |
T |
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| Q |
109 |
agatctccacnnnnnnnatcaaacttcagtcctagcggcctcccacaaacatgctccaattctggtgcgaatggatgcacacagtttgacct |
200 |
Q |
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| T |
35502939 |
agatctccactttttttatcaaacttcagtcctagcggcctcccacaaacatgctccaattctggtgcgaatggatgcacacagtttgacct |
35502848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 35511342 - 35511162
Alignment:
| Q |
13 |
tgaaagggctggccttcagcttctgttgctacctgggtggccaaaccccctacaggtcctactactttgaggccaaggtaggcatcggcaatgtacagat |
112 |
Q |
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| T |
35511342 |
tgaaagggcaggccttcagcttctgttgctacctgagtggccaaaccccctgcaggtcctacgacgttgaggccaaggtaggcatcagccatatacaaat |
35511243 |
T |
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| Q |
113 |
ctccacnnnnnnnatcaaacttcagtcctagcggcctcccacaaacatgctccaattctggtgcgaatggatgcacacagt |
193 |
Q |
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| T |
35511242 |
ctccatttttcttatcaaactttagtcctagtggcctcccacaaacatgctccaactctggtgcgaatggacgcacacagt |
35511162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 35489569 - 35489394
Alignment:
| Q |
25 |
ccttcagcttctgttgctacctgggtggccaaaccccctacaggtcctactactttgaggccaaggtaggcatcggcaatgtacagatctccacnnnnnn |
124 |
Q |
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| T |
35489569 |
ccttcggcttcagttgctacttgggtggccaaacctcctgcagctcctactactttgagaccaaggtaggcatcagcaatgtataaatctccatttttct |
35489470 |
T |
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| Q |
125 |
natcaaacttcagtcctagcggcctcccacaaacatgctccaattctggtgcgaatggatgcacacagtttgacct |
200 |
Q |
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| T |
35489469 |
tatcaaaccttagtcctagtggcctcccgcaaatatgctctaactttggtgcgaatggacgcacacattgtgacct |
35489394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 40160241 - 40160067
Alignment:
| Q |
9 |
gaaatgaaagggctggccttcagcttctgttgctacctgggtggccaaaccccctacaggtcctactactttgaggccaaggtaggcatcggcaatgtac |
108 |
Q |
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|||| |||| || |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
40160241 |
gaaacgaaaaggttggccttcagcttctgttgctaactgtgtggccaaaccccctgcaggtcctactacgttaaggccaaggtaggcatcaacaatgtac |
40160142 |
T |
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| Q |
109 |
agatctccacnnnnnnnatcaaacttcagtcctagcggcctcccacaaacatgctccaattctggtgcgaatgga |
183 |
Q |
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| T |
40160141 |
aaatctccatttttcttatcaaaccttagtcctagtggcctcccacaaatatgctctaactctggtgcaaatgga |
40160067 |
T |
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