View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_high_96 (Length: 248)
Name: NF21242_high_96
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_high_96 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35042275 - 35042505
Alignment:
| Q |
1 |
ctgttggagcacaaacatgggtcccaattttaacttggatgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatc |
100 |
Q |
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| T |
35042275 |
ctgttggagcacaaacatgggtcccaattttaacttgggtgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatc |
35042374 |
T |
|
| Q |
101 |
tttgttcaaattataaaagtgtatattaattaaatagagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaattt |
200 |
Q |
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| T |
35042375 |
attcttcaaat---aaaagtgtatattaa----atggagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaattt |
35042467 |
T |
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| Q |
201 |
cttgagtctaccaaagaacattaccaagataagaataa |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
35042468 |
cttgagtctcccaaagaacattaccaagataagaataa |
35042505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 34988863 - 34988943
Alignment:
| Q |
158 |
gctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataa |
238 |
Q |
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| T |
34988863 |
gctaggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataa |
34988943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 15560236 - 15560163
Alignment:
| Q |
160 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataag |
233 |
Q |
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| T |
15560236 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctaccaaagaacataaccaatataag |
15560163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 15559699 - 15559772
Alignment:
| Q |
160 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataag |
233 |
Q |
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|||||||||||||| || ||||| || |||||||||||| ||||||| || ||||||||||| ||||| ||||| |
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| T |
15559699 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctcccaaagaacataaccaatataag |
15559772 |
T |
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