View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_1 (Length: 736)
Name: NF21242_low_1
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 293 - 721
Target Start/End: Original strand, 45673277 - 45673714
Alignment:
| Q |
293 |
tatttgatacccgaaagagaaaacaaagtgaccctttttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttcaataggatgttt----- |
387 |
Q |
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| T |
45673277 |
tattagatacccgaaagagaaaacaaagtgaccctttttaacatggtattgttgtgtgaagaaaggtatgtacatgggttttaaataggatgtttcaaag |
45673376 |
T |
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| Q |
388 |
---caatcaacatacaaagacaaaaagctacagcctattgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaaggg |
484 |
Q |
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| T |
45673377 |
tttcaatcaacatacaaagacaaaaagctacagcctattgcacgtgaggtttcatttgtaattgttattgtagaccaattccttgaccatacccaaaggg |
45673476 |
T |
|
| Q |
485 |
aaaatgaaacatacaccaacgtatagagataactgacagatagattcccttgccactttattcattccttataattcctactaataattaaatcaccttt |
584 |
Q |
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| T |
45673477 |
aaaatgaaacatacaccaacgtatagagataactgacagatagattcccttgccactttattcattccttataattcctactaataattaaatcaccttt |
45673576 |
T |
|
| Q |
585 |
cctgcaatccaatccttcttaaactttgatttatgcccaaattaacctttataaaatcatttaggatgaatattgtctcccatttataatt-tttaaatg |
683 |
Q |
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| T |
45673577 |
cctgcaatccaatccttcttaaagtttgatttatgcccaaattaacctttataaaatcatttaggatgaatattgtctcccatttataattataaaaatg |
45673676 |
T |
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| Q |
684 |
tgtttggattggatgtgagattcttaaatattagacat |
721 |
Q |
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| T |
45673677 |
tgtttggattggatgtgagattcttaaatattagacat |
45673714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 45673005 - 45673212
Alignment:
| Q |
18 |
gcatggagattttgttgttcattgttgatgattcctaggagaacattctcttgttcttccgcatccgcatgaagatgatcatagtcattattcaaagagt |
117 |
Q |
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| T |
45673005 |
gcatggagattttgttgttcattgttgatgattcctaggagaacattctcttgttcttccg------catgaagatgatcatagtcattattcaaagagt |
45673098 |
T |
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| Q |
118 |
tgaagtaattgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagcc---attattattaatttgtgactaatctaaaa |
214 |
Q |
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| T |
45673099 |
tgaagtaattgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagccattattattattaatttgtgactaatctaaaa |
45673198 |
T |
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| Q |
215 |
ttattgaagagagg |
228 |
Q |
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| T |
45673199 |
ttattgaagagagg |
45673212 |
T |
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