View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_102 (Length: 238)
Name: NF21242_low_102
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 18663495 - 18663701
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663495 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
18663594 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18663595 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
18663694 |
T |
|
| Q |
215 |
ttaagga |
221 |
Q |
| |
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||||||| |
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| T |
18663695 |
ttaagga |
18663701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 15080333 - 15080127
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080333 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
15080234 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080233 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactctgatggtactacgagccggactg |
15080134 |
T |
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| Q |
215 |
ttaagga |
221 |
Q |
| |
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||||||| |
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|
| T |
15080133 |
ttaagga |
15080127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 7534062 - 7534237
Alignment:
| Q |
15 |
caaaggtggacagtacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaa |
114 |
Q |
| |
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||||| |||| |||||||| ||||||||||||||||| | ||||||||| | |||||| || | ||| ||||||||||||||||||||||||||||| |
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| T |
7534062 |
caaagatggatagtacctaaattaatgttcaccaataaccatggcaggagcacaacccattattcatatggtggaaccttttagcatctcggatgatgaa |
7534161 |
T |
|
| Q |
115 |
ttctcttcccacaagatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattact |
190 |
Q |
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||||||||||||||| | |||||||| ||||| |||||| |||||||||||||||| |||| |||||| ||||||| |
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| T |
7534162 |
ttctcttcccacaagcttagaaataaacttcactgcagtgtgacaatcaccacaaaaacggcgattctgaattact |
7534237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 7448529 - 7448690
Alignment:
| Q |
28 |
tacctaggttaatgttcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctcttcccaca |
127 |
Q |
| |
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|||||||||| || |||| |||||||| |||| ||||||||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||| |
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| T |
7448529 |
tacctaggttcatattcaaaaataatccttgcaagagcatagcccatttttaaaatggtggcaccttttagctt---ggatgatgagttctcttcccacg |
7448625 |
T |
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| Q |
128 |
agatcagaaataatcttcaatgcagtatgacaatcaccacaaacacggagattcttaattactct |
192 |
Q |
| |
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| | |||||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||| |
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|
| T |
7448626 |
atcttagaaataatcttcagtgcagtatgacaatcaggacaaatacgaaaattcttaattactct |
7448690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 159
Target Start/End: Complemental strand, 24416966 - 24416850
Alignment:
| Q |
43 |
tcaccaataatccctgcaggagcatagcccatttttaaaatgatggaaccttttagcatctcggatgatgaattctcttcccacaagatcagaaataatc |
142 |
Q |
| |
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|||||||||||||| | ||||||||| |||||||||||||||||||||| |||| ||||| ||||| || ||||||||||| | || ||||||||| |
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| T |
24416966 |
tcaccaataatcccgtccggagcatagtccatttttaaaatgatggaaccctttaagatctcagatgacaaactctcttcccactatttccgaaataatc |
24416867 |
T |
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| Q |
143 |
ttcaatgcagtatgaca |
159 |
Q |
| |
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|||| | |||||||||| |
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| T |
24416866 |
ttcattacagtatgaca |
24416850 |
T |
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