View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_103 (Length: 238)
Name: NF21242_low_103
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35772838 - 35773058
Alignment:
| Q |
1 |
tgatgggaatcagaaagttggagttaagaaagcacttgttttttatggagggaagccaccaaaaggagttaaaactaattggattatgcatgagtatagg |
100 |
Q |
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| T |
35772838 |
tgatgggaatcagaaagttggagttaagaaagcacttgttttttatggagggaagccaccaaaaggagtgaaaactaattggattatgcatgagtacagg |
35772937 |
T |
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| Q |
101 |
ctcatcactgatcacaataatcatcattcttataatgcaacttcaaaaactcctcctctgccttctgatcatcctccaaataataacaagaagaattccc |
200 |
Q |
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| T |
35772938 |
ctcatcactgatcacaataatcatcattcttataatgcaacttcaaaaactcctcctctgccttctgatcatcctccaaataataacaagaagaattccc |
35773037 |
T |
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| Q |
201 |
taagggtatgtatatgcaaaa |
221 |
Q |
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| T |
35773038 |
taagggtatgtatatgcaaaa |
35773058 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 33762396 - 33762484
Alignment:
| Q |
14 |
aaagttggagttaagaaagcacttgttttttatggagggaagccaccaaaaggagttaaaactaattggattatgcatgagtataggct |
102 |
Q |
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| T |
33762396 |
aaagttggtgtgaagaaagctttggttttctatggtgggaaaccaccaagaggtatcaaaaccaattggatcatgcatgagtataggct |
33762484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 20701848 - 20701888
Alignment:
| Q |
57 |
caccaaaaggagttaaaactaattggattatgcatgagtat |
97 |
Q |
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| T |
20701848 |
caccaaaaggaacaaaaactaattggattatgcatgagtat |
20701888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 44371255 - 44371283
Alignment:
| Q |
62 |
aaaggagttaaaactaattggattatgca |
90 |
Q |
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| T |
44371255 |
aaaggagttaaaactaattggattatgca |
44371283 |
T |
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