View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_110 (Length: 223)
Name: NF21242_low_110
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_110 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26690886 - 26691088
Alignment:
| Q |
1 |
agaaaagaaggaaattattagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26690886 |
agaaaagaaggaaattattagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttgac |
26690985 |
T |
|
| Q |
101 |
aatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatga |
200 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690986 |
aatggttgcactaaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatga |
26691085 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
|
||| |
|
|
| T |
26691086 |
tat |
26691088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26732197 - 26732399
Alignment:
| Q |
1 |
agaaaagaaggaaattattagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
26732197 |
agaaaagaaggaaattattagaaatgaaatctttggttgaacaaatagtagaccctacattgggatcaaattatgacatggttaaatcggagactttgac |
26732296 |
T |
|
| Q |
101 |
aatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatga |
200 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26732297 |
aatggttgctctaaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatga |
26732396 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
|
||| |
|
|
| T |
26732397 |
tat |
26732399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26695047 - 26695249
Alignment:
| Q |
1 |
agaaaagaaggaaattattagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttcac |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26695047 |
agaaaagaaggaatttatcagaaatgaaatctttggtggaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttgac |
26695146 |
T |
|
| Q |
101 |
aatggttgctttgaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttgatga |
200 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26695147 |
aatggttgctctaaagtgtgttgaggaagagaaagacatgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttcatga |
26695246 |
T |
|
| Q |
201 |
tat |
203 |
Q |
| |
|
||| |
|
|
| T |
26695247 |
tat |
26695249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 26675154 - 26674996
Alignment:
| Q |
39 |
gaacaaatagtagaccctacattgggatcaaattatgacatggttaaattggagactttcacaatggttgctttgaagtgtgttgaggaagagaaagaca |
138 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||||| ||| ||||| |||| || || |||| |||||| | ||||| ||| |||||||||| |
|
|
| T |
26675154 |
gaacaaatagttgaccctgcattgggattaaattatgacattgttcaattgaagaccttggcagtggtggctttggattgtgtagagaaagagaaagatg |
26675055 |
T |
|
| Q |
139 |
tgagacctaacatgagtgaagttgttgaaatgcttcaaactcatgaacatgattcttga |
197 |
Q |
| |
|
| ||||| | ||||||| |||||||||| | ||| |||| |||| |||||||||||||| |
|
|
| T |
26675054 |
ttagacccaccatgagtcaagttgttgagaggctccaaagtcatcaacatgattcttga |
26674996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University