View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21242_low_13 (Length: 532)
Name: NF21242_low_13
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Original strand, 48695343 - 48695840
Alignment:
| Q |
19 |
aaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatcatcacccttatcttcggcggaagggagattaaagtcattaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695343 |
aaatggaatgttaaggattgatatacccaatgagtgtgaggccactacttcatcatcatcacccttatcttcggcggaagggagattaaagtcattaaag |
48695442 |
T |
|
| Q |
119 |
aggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccacttctactgtccaacaacaaacaaagccaaaggaagcagcaggac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695443 |
aggcttttaagcagtagcagcagaggcataatgagcctgaatccttggagtcccacttctactgtccaacaacaaacaaagccaaaggaagcagcaggac |
48695542 |
T |
|
| Q |
219 |
aaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcattcattattatactttttaagtacatatatagatgtacatgtag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695543 |
aaagctagctggctggctagggtggaactccaatttcccaatgttttattcattcattcattattatactttttaagtacatatatagatgtacatgtag |
48695642 |
T |
|
| Q |
319 |
gtatgttaatgtaagcccgcccaaactgaggcagcagcaatcaatcaatcaaagttgtacattatacaaatactctgagaatagaaaattaaatttaaaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695643 |
gtatgttaatgtaagcccgcccaaactgaggcagcagcaatcaatcaatcaaagttgtatattatacaaatactctgagaatagaaaattaaatttaaaa |
48695742 |
T |
|
| Q |
419 |
caaaccaggaagtaactatgctgaccgttgtaaacaagaaccaaaataaaatggtactgtcttctgtctgtgaccaccgtcttcttggccctctctct |
516 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48695743 |
caaaccaggaagtaactgtgctgaccattgtaaacaagaaccaaaataaaatggtactgtcttctgtctgtgaccaccgtcttcttggccctctctct |
48695840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University