View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_14 (Length: 530)
Name: NF21242_low_14
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Original strand, 46824654 - 46825167
Alignment:
| Q |
10 |
acatcatcaccatctcccaacaatggcataaagatttgacattaatacataaaatccaccatttttgtgatttaatagaaacaannnnnnngccaagcat |
109 |
Q |
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| T |
46824654 |
acatcatc-ccatctcccaacaatggcataaagatttgacattaatacataaaatccaccatttttgtgatttaatagaaacaatttttttgccaagcat |
46824752 |
T |
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| Q |
110 |
tccccaagcttcacctctcgttggatgcaacaagcatttagcaaagctccccagacagcagaatcgggctgaatctccattttgtttataaattcaattg |
209 |
Q |
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| T |
46824753 |
tccccaagcttcacctctcgttggatgcaacaagcatttaacaaagctccccagacagcagaatcgggctgaatctccattttgtttataaattcaattg |
46824852 |
T |
|
| Q |
210 |
cttccttgaacaagccttctttacctaatagagcaactatgcatgcataatgttgcagactcggcatcaaaccatactctttagtcatgatattgaagta |
309 |
Q |
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| T |
46824853 |
cttccttgaacaagccttctttacctaatagagcaactatgcatgcataatgttgcagactgggcatcaaaccatactctttagtcatgatattgaagta |
46824952 |
T |
|
| Q |
310 |
ttccagtcctaaatagacaagttccccgtgcgtgcatgctgccaaaactcccaagaaggtgattttatccggttttaacccttgttcttgcagtttagaa |
409 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46824953 |
ttccagtcctaaatagacaagtcccccatgcgtgcatgctgccaaaactcccaagaaggtgattttatccggttttaacccttgttcttgcagtttagaa |
46825052 |
T |
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| Q |
410 |
taacaaccgaaagctgtatgctcaagaccatataaactataacctgatatgatggcattccatgttgccaaacatggatccttgatgttataaaatacct |
509 |
Q |
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| T |
46825053 |
taacaaccgaaagctgtatgctcaagaccatataaactataacctgatatgatggcattccatgttgccaaacatggatccttgatgttataaaatacct |
46825152 |
T |
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| Q |
510 |
tttcagtataatcta |
524 |
Q |
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|||||| |||||||| |
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| T |
46825153 |
tttcagcataatcta |
46825167 |
T |
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