View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21242_low_16 (Length: 512)
Name: NF21242_low_16
Description: NF21242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21242_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 50044830 - 50044622
Alignment:
| Q |
10 |
aaaaatatgaccaaattcccttcatacaaacttcatgtccacaagtccatatctctttatattaatgtttgttttttgttctactcagtttatgaagggc |
109 |
Q |
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| T |
50044830 |
aaaaatatgaccaaattcccttcatacaaacttcatgtccacaagtccatatctctttatattaatgtttgttttttgttctactcagtttatgaagggc |
50044731 |
T |
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| Q |
110 |
ctaaaaggcggggtgctggaagaaataccgtatgtaacagaatttctgagtga-ttggaagacgaggtatatccttttttaaattttaatcaccaatact |
208 |
Q |
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| T |
50044730 |
ctaaaaggcggggtgctggaagaaataccgtatgtaacagaatttctgagtgatttggaagacgaggtatatcctttttaaaattttaatcaccaatact |
50044631 |
T |
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| Q |
209 |
cttctaggc |
217 |
Q |
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||||||||| |
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| T |
50044630 |
cttctaggc |
50044622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 320 - 494
Target Start/End: Complemental strand, 50044512 - 50044338
Alignment:
| Q |
320 |
tccatggatattaaacatcgcatgcccatagctaaaccttagacaaacttatatacaattagtaatttagtgtgtgggagaaagataacggccaaagtaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50044512 |
tccatggatattaaacatcgcatgcccatagctaaaccttagacaaacttatatgcaattagtaatttagtgtgtgggagaaagataacggccaaagtaa |
50044413 |
T |
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| Q |
420 |
aaagttattcctgaaattccaaaagatcttggttatccatcagctttaaaccatgttttgaggaaaggggaccaa |
494 |
Q |
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| T |
50044412 |
aaagttattcctgaaattccaaaagatcttggttatccatcagctttaaaccatgttttgaggaaaggggaccaa |
50044338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 50044605 - 50044573
Alignment:
| Q |
228 |
tcactaaagctcttcactgatctagtgaggagc |
260 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
50044605 |
tcactaaagctcttcagtgatctagtgaggagc |
50044573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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